CX293958

Overview
NameCX293958
Unique NameCX293958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig426 contig Ccv1_Contig426:6..561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_NANEQ (50S ribosomal protein L14P OS=Nanoarchaeum equitans GN=rpl14p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24
Identity = 56/122 (45.90%), Postives = 80/122 (65.57%), Query Frame = 1
Query:   70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNA-GVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432
            LPV A +N AD++GAK + +I+VKG KGR  RL  A + D+V+ +V+ GKPD+  ++  AV+VR +K WRR+DG  + FEDNA  ++ +  G   G+ I  PI KE A+ WP +A  A  IV
Sbjct:   12 LPVGAYLNVADNSGAKVVKLIAVKGYKGRKRRLAKAGIADLVIVSVRDGKPDMIGQIFKAVVVRMKKEWRRRDGTRIKFEDNAVALLKDDYGTPKGTIIKTPIAKEVAERWPDLAKIARIIV 133          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_METLZ (50S ribosomal protein L14P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.569e-23
Identity = 50/121 (41.32%), Postives = 82/121 (67.77%), Query Frame = 1
Query:   70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432
            L   + + CAD+TGA+ + I+SV G  G  NR P   +GD+   TVKKG PD+++K++ AV+VRQ+K +RR +G+ + FE+NA +++N  G+  G+ I GP+ +E A+ +P++ S A  I+
Sbjct:   12 LQTGSKMVCADNTGARVVQIVSVFGYHGVKNRQPKMGLGDLATVTVKKGTPDMKRKLVRAVVVRQKKEFRRPNGLRVSFEENAMILLNENGDPRGTDIKGPVAREVAERFPKVGSMATIII 132          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_UNCMA (50S ribosomal protein L14P OS=Uncultured methanogenic archaeon RC-I GN=rpl14p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.021e-22
Identity = 50/128 (39.06%), Postives = 83/128 (64.84%), Query Frame = 1
Query:   49 KFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432
            K ++   +  A  +  AD+TGA+ + +ISV   +GR NR+P A +GD+ + +VKKG P++RK ++  V++RQ+K +RR  G+ + FEDNA V+V+   +  G+ I GP+ +E A+ + +I S A  IV
Sbjct:    5 KAKIPRSVHTATRLEVADNTGARLVEVISVLKYRGRKNRMPKAGIGDIFIGSVKKGTPEMRKTIVRCVVIRQKKEYRRPSGLRVSFEDNACVLVDDNNDPKGTEIKGPVAREVAERYAKIGSTATIIV 132          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_METHJ (50S ribosomal protein L14P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.790e-22
Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432
            + CAD+TGA+ + ++SV G  G   R P   + D+   +VKKG PD+R+K++ AV++RQ+K  RR  G+ + FEDNA V+V+ K E  G+ I GP+ +E A  +PRI S A  IV
Sbjct:   18 LTCADNTGARVVQVVSVFGYHGVRRRQPKLGLADIATVSVKKGTPDMRRKLVRAVVIRQKKEIRRPSGLRLSFEDNAVVVVDDKNEPRGTEIKGPVAREVAIRYPRIGSMATIIV 132          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_METMJ (50S ribosomal protein L14P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.499e-21
Identity = 50/121 (41.32%), Postives = 79/121 (65.29%), Query Frame = 1
Query:   70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432
            L   + + C+D+TGA+ + ++SV    G   R P   +GD+   +VKKG PD+R+K+  AV++RQ+K  RR +G+ + FEDNA V++N +GE  G+ I G + +E A+ +P+IAS A  IV
Sbjct:   12 LATGSRMVCSDNTGARLVEVVSVDRYHGVRRRQPCLGLGDVATVSVKKGTPDMRRKLEKAVVIRQKKEIRRPNGIRLSFEDNAMVLINERGEPKGTEIKGAVPREIAERFPKIASMATTIV 132          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_DEHE1 (50S ribosomal protein L14 OS=Dehalococcoides ethenogenes (strain 195) GN=rplN PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.208e-16
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            +N AD+TGAK +  I+V G   +L     A VGD+++A VKK  PD + K   V+ AV+VR  KP+ R DG ++ F+DNA VI+N K E  G+ I GP+ +E  D
Sbjct:    8 LNVADNTGAKKIMCINVLGGSRKLQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_DEHSC (50S ribosomal protein L14 OS=Dehalococcoides sp. (strain CBDB1) GN=rplN PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.229e-15
Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            +N AD+TGAK +  I+V G   ++     A VGD+++A VKK  PD + K   V+ AV+VR  KP+ R DG ++ F+DNA VI+N K E  G+ I GP+ +E  D
Sbjct:    8 LNVADNTGAKKIMCINVLGGSHKIQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_DEHSB (50S ribosomal protein L14 OS=Dehalococcoides sp. (strain BAV1) GN=rplN PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.229e-15
Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            +N AD+TGAK +  I+V G   ++     A VGD+++A VKK  PD + K   V+ AV+VR  KP+ R DG ++ F+DNA VI+N K E  G+ I GP+ +E  D
Sbjct:    8 LNVADNTGAKKIMCINVLGGSHKIQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_THERP (50S ribosomal protein L14 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplN PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 49/112 (43.75%), Postives = 73/112 (65.18%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAA 420
            AD+TGAK +  I V G  G  +R  +  VGD+++A+VKK +P+   K   V+ AVIVR +K +RRKDG ++ F+DNA V+V P+G+  G+ I GP+ +E  +  + RI S A
Sbjct:   11 ADNTGAKEIMCIRVLG--GSKHRYGT--VGDLIVASVKKAEPNAAVKKGDVVYAVIVRTKKEYRRKDGSYIKFDDNAAVLVTPQGQPRGTRIFGPVARELREKHYMRIISLA 118          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_SACEN (50S ribosomal protein L14 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=rplN PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            AD++GAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVRQ+K  RR DG ++ F++NA V++ P GE  G+ I GP+G+E  D
Sbjct:   11 ADNSGAKEILTIRVLGGSGRRY----AGIGDIIVATVKDAIPGANVKKGEVVKAVIVRQKKEKRRADGSYIRFDENAAVLIKPSGEPRGTRIFGPVGRELRD 108          
The following BLAST results are available for this feature:
BLAST of CX293958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279
Match NameE-valueIdentityDescription
RL14_NANEQ9.392e-2445.9050S ribosomal protein L14P OS=Nanoarchaeum equitan... [more]
RL14_METLZ3.569e-2341.3250S ribosomal protein L14P OS=Methanocorpusculum l... [more]
RL14_UNCMA3.021e-2239.0650S ribosomal protein L14P OS=Uncultured methanoge... [more]
RL14_METHJ8.790e-2244.3550S ribosomal protein L14P OS=Methanospirillum hun... [more]
RL14_METMJ1.499e-2141.3250S ribosomal protein L14P OS=Methanoculleus maris... [more]
RL14_DEHE17.208e-1644.7650S ribosomal protein L14 OS=Dehalococcoides ethen... [more]
RL14_DEHSC1.229e-1543.8150S ribosomal protein L14 OS=Dehalococcoides sp. (... [more]
RL14_DEHSB1.229e-1543.8150S ribosomal protein L14 OS=Dehalococcoides sp. (... [more]
RL14_THERP6.102e-1543.7550S ribosomal protein L14 OS=Thermomicrobium roseu... [more]
RL14_SACEN1.041e-1444.1250S ribosomal protein L14 OS=Saccharopolyspora ery... [more]

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Properties
Property NameValue
Genbank descriptionC05004B01SK FlavRip1 Citrus clementina cDNA clone C05004B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293958 ID=CX293958; Name=CX293958; organism=Citrus clementina; type=EST; length=556bp
TTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAACAA
GTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGCTG
ACGACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAA
GGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGC
TACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGCCG
TCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATG
TACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATGAA
TGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGC
CGAGGATTGCAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGA
TAACCTATATCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTT
CATACTAAGAAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTTGT
TATTCT
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