CX293958
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_NANEQ (50S ribosomal protein L14P OS=Nanoarchaeum equitans GN=rpl14p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 9.392e-24 Identity = 56/122 (45.90%), Postives = 80/122 (65.57%), Query Frame = 1 Query: 70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNA-GVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 LPV A +N AD++GAK + +I+VKG KGR RL A + D+V+ +V+ GKPD+ ++ AV+VR +K WRR+DG + FEDNA ++ + G G+ I PI KE A+ WP +A A IV Sbjct: 12 LPVGAYLNVADNSGAKVVKLIAVKGYKGRKRRLAKAGIADLVIVSVRDGKPDMIGQIFKAVVVRMKKEWRRRDGTRIKFEDNAVALLKDDYGTPKGTIIKTPIAKEVAERWPDLAKIARIIV 133
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_METLZ (50S ribosomal protein L14P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl14p PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 3.569e-23 Identity = 50/121 (41.32%), Postives = 82/121 (67.77%), Query Frame = 1 Query: 70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 L + + CAD+TGA+ + I+SV G G NR P +GD+ TVKKG PD+++K++ AV+VRQ+K +RR +G+ + FE+NA +++N G+ G+ I GP+ +E A+ +P++ S A I+ Sbjct: 12 LQTGSKMVCADNTGARVVQIVSVFGYHGVKNRQPKMGLGDLATVTVKKGTPDMKRKLVRAVVVRQKKEFRRPNGLRVSFEENAMILLNENGDPRGTDIKGPVAREVAERFPKVGSMATIII 132
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_UNCMA (50S ribosomal protein L14P OS=Uncultured methanogenic archaeon RC-I GN=rpl14p PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 3.021e-22 Identity = 50/128 (39.06%), Postives = 83/128 (64.84%), Query Frame = 1 Query: 49 KFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 K ++ + A + AD+TGA+ + +ISV +GR NR+P A +GD+ + +VKKG P++RK ++ V++RQ+K +RR G+ + FEDNA V+V+ + G+ I GP+ +E A+ + +I S A IV Sbjct: 5 KAKIPRSVHTATRLEVADNTGARLVEVISVLKYRGRKNRMPKAGIGDIFIGSVKKGTPEMRKTIVRCVVIRQKKEYRRPSGLRVSFEDNACVLVDDNNDPKGTEIKGPVAREVAERYAKIGSTATIIV 132
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_METHJ (50S ribosomal protein L14P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl14p PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 8.790e-22 Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 + CAD+TGA+ + ++SV G G R P + D+ +VKKG PD+R+K++ AV++RQ+K RR G+ + FEDNA V+V+ K E G+ I GP+ +E A +PRI S A IV Sbjct: 18 LTCADNTGARVVQVVSVFGYHGVRRRQPKLGLADIATVSVKKGTPDMRRKLVRAVVIRQKKEIRRPSGLRLSFEDNAVVVVDDKNEPRGTEIKGPVAREVAIRYPRIGSMATIIV 132
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_METMJ (50S ribosomal protein L14P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl14p PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.499e-21 Identity = 50/121 (41.32%), Postives = 79/121 (65.29%), Query Frame = 1 Query: 70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADLWPRIASAANAIV 432 L + + C+D+TGA+ + ++SV G R P +GD+ +VKKG PD+R+K+ AV++RQ+K RR +G+ + FEDNA V++N +GE G+ I G + +E A+ +P+IAS A IV Sbjct: 12 LATGSRMVCSDNTGARLVEVVSVDRYHGVRRRQPCLGLGDVATVSVKKGTPDMRRKLEKAVVIRQKKEIRRPNGIRLSFEDNAMVLINERGEPKGTEIKGAVPREIAERFPKIASMATTIV 132
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_DEHE1 (50S ribosomal protein L14 OS=Dehalococcoides ethenogenes (strain 195) GN=rplN PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 7.208e-16 Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 +N AD+TGAK + I+V G +L A VGD+++A VKK PD + K V+ AV+VR KP+ R DG ++ F+DNA VI+N K E G+ I GP+ +E D Sbjct: 8 LNVADNTGAKKIMCINVLGGSRKLQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_DEHSC (50S ribosomal protein L14 OS=Dehalococcoides sp. (strain CBDB1) GN=rplN PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.229e-15 Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 +N AD+TGAK + I+V G ++ A VGD+++A VKK PD + K V+ AV+VR KP+ R DG ++ F+DNA VI+N K E G+ I GP+ +E D Sbjct: 8 LNVADNTGAKKIMCINVLGGSHKIQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_DEHSB (50S ribosomal protein L14 OS=Dehalococcoides sp. (strain BAV1) GN=rplN PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.229e-15 Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 +N AD+TGAK + I+V G ++ A VGD+++A VKK PD + K V+ AV+VR KP+ R DG ++ F+DNA VI+N K E G+ I GP+ +E D Sbjct: 8 LNVADNTGAKKIMCINVLGGSHKIQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_THERP (50S ribosomal protein L14 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplN PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15 Identity = 49/112 (43.75%), Postives = 73/112 (65.18%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAA 420 AD+TGAK + I V G G +R + VGD+++A+VKK +P+ K V+ AVIVR +K +RRKDG ++ F+DNA V+V P+G+ G+ I GP+ +E + + RI S A Sbjct: 11 ADNTGAKEIMCIRVLG--GSKHRYGT--VGDLIVASVKKAEPNAAVKKGDVVYAVIVRTKKEYRRKDGSYIKFDDNAAVLVTPQGQPRGTRIFGPVARELREKHYMRIISLA 118
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_SACEN (50S ribosomal protein L14 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=rplN PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14 Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 AD++GAK + I V G GR A +GD+++ATVK P K V+ AVIVRQ+K RR DG ++ F++NA V++ P GE G+ I GP+G+E D Sbjct: 11 ADNSGAKEILTIRVLGGSGRRY----AGIGDIIVATVKDAIPGANVKKGEVVKAVIVRQKKEKRRADGSYIRFDENAAVLIKPSGEPRGTRIFGPVGRELRD 108 The following BLAST results are available for this feature:
BLAST of CX293958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 279
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293958 ID=CX293958; Name=CX293958; organism=Citrus clementina; type=EST; length=556bpback to top |