CX293958
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL23_ONCVO (60S ribosomal protein L23 (Fragment) OS=Onchocerca volvulus GN=RPL23 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14 Identity = 36/48 (75.00%), Postives = 44/48 (91.67%), Query Frame = 1 Query: 13 MSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGR 156 MSKRGRGG++G KFR+SLGLPV A +NCAD+TGAKNL++I+V GIKGR Sbjct: 1 MSKRGRGGTSGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVYGIKGR 48
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_CLAMS (50S ribosomal protein L14 OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=rplN PE=3 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14 Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 AD+TGAK + I V G GR A +GD+++ATVK P +++K +V+ AVIVR +K RR DG ++ F++NA VI+N GE G+ I GP+G+E D Sbjct: 11 ADNTGAKEILTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGEVVKAVIVRTKKETRRPDGSYIKFDENAAVILNSNGEPRGTRIFGPVGRELRD 108
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_CLAM3 (50S ribosomal protein L14 OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=rplN PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14 Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 AD+TGAK + I V G GR A +GD+++ATVK P +++K +V+ AVIVR +K RR DG ++ F++NA VI+N GE G+ I GP+G+E D Sbjct: 11 ADNTGAKEILTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGEVVKAVIVRTKKETRRPDGSYIKFDENAAVILNSNGEPRGTRIFGPVGRELRD 108
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_ZYGCR (50S ribosomal protein L14, chloroplastic OS=Zygnema circumcarinatum GN=rpl14 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14 Identity = 44/119 (36.97%), Postives = 73/119 (61.34%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432 +N AD++GA+ L I V G R A +GDMV+A VK+ P++ + +++ AVIVR RK +R +G+ + F+DNA V++N +G G+ + GP+ +E DL + +I S A ++ Sbjct: 8 LNVADNSGARKLMCIRVLGSSNR----KYAHIGDMVIAVVKETVPNMPLKKSEIVRAVIVRTRKGLKRDNGMVLRFDDNAAVVINQEGNPRGTRVFGPVARELRDLNFTKIVSLAPEVL 122
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_STIHE (50S ribosomal protein L14, chloroplastic OS=Stigeoclonium helveticum GN=rpl14 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.151e-13 Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKG-IKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 +N AD+TGA+ + I V G I+G+ +A +GD+++A VK P+ K ++ AV+VR RK RR++G+F+ FEDNA V++N +G G+ I GP+ +E D Sbjct: 8 LNVADNTGARKVMCIRVLGGIQGQ-----TANIGDVIIAVVKDALPNTGVKKSDIVRAVVVRTRKGIRRENGMFIRFEDNAAVVINKEGNPRGTRIFGPVARELRD 108
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_CHLT3 (50S ribosomal protein L14 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rplN PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.963e-13 Identity = 45/116 (38.79%), Postives = 70/116 (60.34%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD-LWPRIASAANAIV 432 AD++GAK + I V G GR A +GDM++ +VK P +K V AV+VR +K +RRKDG ++ F++NA V++N +GE G+ I GP+ +E D + +I S A ++ Sbjct: 11 ADNSGAKRVRCIHVLGGTGRRY----ATIGDMIVVSVKSAIPGGAVKKKDVSKAVVVRTKKEYRRKDGSYIRFDENAVVLLNTQGEPRGTRIFGPVARELRDKQYMKIISLAPEVI 122
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_THEEB (50S ribosomal protein L14 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplN PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.348e-13 Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 +N AD++GAK L I V G G R S VGD+++ATVK P++ K V+ AVIVR RK RR+ G+ + F+DNA V++N G G+ + GP+ +E D Sbjct: 8 LNVADNSGAKKLLCIRVLG--GSNRRYGS--VGDVIIATVKDATPNMAVKKSDVVRAVIVRTRKSIRRESGMSIRFDDNAAVLINQDGNPRGTRVFGPVARELRD 108
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_MICLU (50S ribosomal protein L14 OS=Micrococcus luteus GN=rplN PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.348e-13 Identity = 48/116 (41.38%), Postives = 67/116 (57.76%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD-LWPRIASAANAIV 432 AD+TGAK + I V G GR A +GD ++ATVK P K V+ AV+VR RK RR DG ++ F++NA VI+ GE G+ I GP+G+E D + +I S A ++ Sbjct: 11 ADNTGAKEILTIRVLGGSGRRY----AGIGDTIVATVKDAIPGGNVKKAHVVKAVVVRTRKQSRRPDGSYIKFDENAAVILKTDGEPRGTRIFGPVGRELRDKKFMKIVSLAPEVI 122
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_MICLC (50S ribosomal protein L14 OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=rplN PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.348e-13 Identity = 48/116 (41.38%), Postives = 67/116 (57.76%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD-LWPRIASAANAIV 432 AD+TGAK + I V G GR A +GD ++ATVK P K V+ AV+VR RK RR DG ++ F++NA VI+ GE G+ I GP+G+E D + +I S A ++ Sbjct: 11 ADNTGAKEILTIRVLGGSGRRY----AGIGDTIVATVKDAIPGGNVKKGDVVKAVVVRTRKQSRRPDGSYIKFDENAAVILKTDGEPRGTRIFGPVGRELRDKKFMKIVSLAPEVI 122
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_LEIXX (50S ribosomal protein L14 OS=Leifsonia xyli subsp. xyli GN=rplN PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 5.711e-13 Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 AD+TGAK L I V G GR A +GD+++ATVK P K V+ AVIVR RK RR DG ++ F++NA VI+ G+ G+ I GP+G+E D Sbjct: 11 ADNTGAKELLTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGDVVKAVIVRTRKNTRRTDGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108 The following BLAST results are available for this feature:
BLAST of CX293958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 279
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293958 ID=CX293958; Name=CX293958; organism=Citrus clementina; type=EST; length=556bpback to top |