CX293958

Overview
NameCX293958
Unique NameCX293958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL23_ONCVO (60S ribosomal protein L23 (Fragment) OS=Onchocerca volvulus GN=RPL23 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.359e-14
Identity = 36/48 (75.00%), Postives = 44/48 (91.67%), Query Frame = 1
Query:   13 MSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGR 156
            MSKRGRGG++G KFR+SLGLPV A +NCAD+TGAKNL++I+V GIKGR
Sbjct:    1 MSKRGRGGTSGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVYGIKGR 48          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_CLAMS (50S ribosomal protein L14 OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=rplN PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            AD+TGAK +  I V G  GR      A +GD+++ATVK   P  +++K +V+ AVIVR +K  RR DG ++ F++NA VI+N  GE  G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGEVVKAVIVRTKKETRRPDGSYIKFDENAAVILNSNGEPRGTRIFGPVGRELRD 108          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_CLAM3 (50S ribosomal protein L14 OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=rplN PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            AD+TGAK +  I V G  GR      A +GD+++ATVK   P  +++K +V+ AVIVR +K  RR DG ++ F++NA VI+N  GE  G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGEVVKAVIVRTKKETRRPDGSYIKFDENAAVILNSNGEPRGTRIFGPVGRELRD 108          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_ZYGCR (50S ribosomal protein L14, chloroplastic OS=Zygnema circumcarinatum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 44/119 (36.97%), Postives = 73/119 (61.34%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432
            +N AD++GA+ L  I V G   R      A +GDMV+A VK+  P++   + +++ AVIVR RK  +R +G+ + F+DNA V++N +G   G+ + GP+ +E  DL + +I S A  ++
Sbjct:    8 LNVADNSGARKLMCIRVLGSSNR----KYAHIGDMVIAVVKETVPNMPLKKSEIVRAVIVRTRKGLKRDNGMVLRFDDNAAVVINQEGNPRGTRVFGPVARELRDLNFTKIVSLAPEVL 122          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_STIHE (50S ribosomal protein L14, chloroplastic OS=Stigeoclonium helveticum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.151e-13
Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKG-IKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            +N AD+TGA+ +  I V G I+G+     +A +GD+++A VK   P+   K   ++ AV+VR RK  RR++G+F+ FEDNA V++N +G   G+ I GP+ +E  D
Sbjct:    8 LNVADNTGARKVMCIRVLGGIQGQ-----TANIGDVIIAVVKDALPNTGVKKSDIVRAVVVRTRKGIRRENGMFIRFEDNAAVVINKEGNPRGTRIFGPVARELRD 108          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_CHLT3 (50S ribosomal protein L14 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.963e-13
Identity = 45/116 (38.79%), Postives = 70/116 (60.34%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD-LWPRIASAANAIV 432
            AD++GAK +  I V G  GR      A +GDM++ +VK   P     +K V  AV+VR +K +RRKDG ++ F++NA V++N +GE  G+ I GP+ +E  D  + +I S A  ++
Sbjct:   11 ADNSGAKRVRCIHVLGGTGRRY----ATIGDMIVVSVKSAIPGGAVKKKDVSKAVVVRTKKEYRRKDGSYIRFDENAVVLLNTQGEPRGTRIFGPVARELRDKQYMKIISLAPEVI 122          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_THEEB (50S ribosomal protein L14 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.348e-13
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            +N AD++GAK L  I V G  G   R  S  VGD+++ATVK   P++  K   V+ AVIVR RK  RR+ G+ + F+DNA V++N  G   G+ + GP+ +E  D
Sbjct:    8 LNVADNSGAKKLLCIRVLG--GSNRRYGS--VGDVIIATVKDATPNMAVKKSDVVRAVIVRTRKSIRRESGMSIRFDDNAAVLINQDGNPRGTRVFGPVARELRD 108          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_MICLU (50S ribosomal protein L14 OS=Micrococcus luteus GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.348e-13
Identity = 48/116 (41.38%), Postives = 67/116 (57.76%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD-LWPRIASAANAIV 432
            AD+TGAK +  I V G  GR      A +GD ++ATVK   P    K   V+ AV+VR RK  RR DG ++ F++NA VI+   GE  G+ I GP+G+E  D  + +I S A  ++
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDTIVATVKDAIPGGNVKKAHVVKAVVVRTRKQSRRPDGSYIKFDENAAVILKTDGEPRGTRIFGPVGRELRDKKFMKIVSLAPEVI 122          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_MICLC (50S ribosomal protein L14 OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.348e-13
Identity = 48/116 (41.38%), Postives = 67/116 (57.76%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD-LWPRIASAANAIV 432
            AD+TGAK +  I V G  GR      A +GD ++ATVK   P    K   V+ AV+VR RK  RR DG ++ F++NA VI+   GE  G+ I GP+G+E  D  + +I S A  ++
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDTIVATVKDAIPGGNVKKGDVVKAVVVRTRKQSRRPDGSYIKFDENAAVILKTDGEPRGTRIFGPVGRELRDKKFMKIVSLAPEVI 122          
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_LEIXX (50S ribosomal protein L14 OS=Leifsonia xyli subsp. xyli GN=rplN PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.711e-13
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393
            AD+TGAK L  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR RK  RR DG ++ F++NA VI+   G+  G+ I GP+G+E  D
Sbjct:   11 ADNTGAKELLTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGDVVKAVIVRTRKNTRRTDGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
The following BLAST results are available for this feature:
BLAST of CX293958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279
Match NameE-valueIdentityDescription
RL23_ONCVO1.359e-1475.0060S ribosomal protein L23 (Fragment) OS=Onchocerca... [more]
RL14_CLAMS6.746e-1445.1050S ribosomal protein L14 OS=Clavibacter michigane... [more]
RL14_CLAM36.746e-1445.1050S ribosomal protein L14 OS=Clavibacter michigane... [more]
RK14_ZYGCR6.746e-1436.9750S ribosomal protein L14, chloroplastic OS=Zygnem... [more]
RK14_STIHE1.151e-1340.5750S ribosomal protein L14, chloroplastic OS=Stigeo... [more]
RL14_CHLT31.963e-1338.7950S ribosomal protein L14 OS=Chloroherpeton thalas... [more]
RL14_THEEB3.348e-1342.8650S ribosomal protein L14 OS=Thermosynechococcus e... [more]
RL14_MICLU3.348e-1341.3850S ribosomal protein L14 OS=Micrococcus luteus GN... [more]
RL14_MICLC3.348e-1341.3850S ribosomal protein L14 OS=Micrococcus luteus (s... [more]
RL14_LEIXX5.711e-1345.1050S ribosomal protein L14 OS=Leifsonia xyli subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC05004B01SK FlavRip1 Citrus clementina cDNA clone C05004B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293958 ID=CX293958; Name=CX293958; organism=Citrus clementina; type=EST; length=556bp
TTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAACAA
GTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGCTG
ACGACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAA
GGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGC
TACCGTGAAGAAAGGGAAGCCTGATCTTAGGAAGAAGGTGATGCCCGCCG
TCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATG
TACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATGAA
TGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGC
CGAGGATTGCAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGA
TAACCTATATCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTT
CATACTAAGAAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTTGT
TATTCT
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