CX293958
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_DESVM (50S ribosomal protein L14 OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=rplN PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 5.711e-13 Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 1 Query: 70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKE 384 + V +T+ AD++GAK + I V G G R A VGD+V+ +VK+ P + K VM AVIVR RK RR DG ++ F+ NA V++N +GE G+ I GP+ +E Sbjct: 2 IQVESTLQVADNSGAKKVACIKVLG--GSKRRY--ATVGDIVVVSVKEALPHCKVKKGDVMQAVIVRTRKEVRRVDGSYIKFDSNAAVLLNKQGEPVGTRIFGPVARE 105
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_CYAP4 (50S ribosomal protein L14 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplN PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 5.711e-13 Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 +N AD++GAK L I V G G R S VGD+++ATVK P++ K V+ AVIVR RK RR+ G+ + F+DNA V++N G G+ + GP+ +E D Sbjct: 8 LNVADNSGAKKLLCIRVLG--GGNRRYGS--VGDVIIATVKDATPNMPVKKSDVVRAVIVRTRKAIRRESGMSIRFDDNAAVLINQDGNPKGTRVFGPVARELRD 108
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_BEUC1 (50S ribosomal protein L14 OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=rplN PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 5.711e-13 Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD-LWPRIASAANAIV 432 AD+TGAK + I V G GR A +GD+++ATVK P R V+ AV+VR K RR DG ++ F++NA V++ GE G+ I GP+G+E D + RI S A ++ Sbjct: 11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTAKERRRPDGSYIRFDENAAVLLKSDGEPRGTRIFGPVGRELRDKKFMRIVSLAPEVI 122
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_ACAM1 (50S ribosomal protein L14 OS=Acaryochloris marina (strain MBIC 11017) GN=rplN PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 5.711e-13 Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 1 Query: 85 TVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 T+N AD++GAK L I V G R VGD+++ATVK P++ K V+ AVIVR RK R+ G+ + F+DNA V++NP G G+ + GP+ +E D Sbjct: 7 TLNVADNSGAKRLLCIRVIGGGNRRY----GGVGDVIIATVKDATPNMPVKKSDVVRAVIVRTRKSICRESGMSIRFDDNAAVLINPDGNPRGTRVFGPVARELRD 108
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_STAPU (50S ribosomal protein L14, chloroplastic OS=Staurastrum punctulatum GN=rpl14 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 5.711e-13 Identity = 43/119 (36.13%), Postives = 71/119 (59.66%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432 +N AD++GA+ L I V G R A +GDM++A VK+ P++ + +V+ AVIVR K +R +G+ + F+DNA V+VN +G G+ + GP+ +E D + +I S A ++ Sbjct: 8 LNVADNSGARRLMCIRVLGSSNR----KYANIGDMIIAVVKEAVPNMPLKKSEVVRAVIVRTCKGIKRNNGMILRFDDNAAVVVNQEGNPRGTRVFGPVARELRDFNFTKIVSLAPEVL 122
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_GRAFK (50S ribosomal protein L14 OS=Gramella forsetii (strain KT0803) GN=rplN PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 7.459e-13 Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 AD+TGAK + I V G G R S VGD ++ +VK+ P+ K V AV+VR RK RR DG ++ F+DNA V++ P+GEM G+ + GP+ +E D Sbjct: 11 ADNTGAKEVLAIRVLG--GTKKRYAS--VGDKIVVSVKEATPNGSIKKGAVSTAVVVRTRKEVRRPDGSYIRFDDNACVLLGPQGEMRGTRVFGPVARELRD 108
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_CHLRE (50S ribosomal protein L14, chloroplastic OS=Chlamydomonas reinhardtii GN=rpl14 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 7.459e-13 Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD 393 +N AD++GA+ L I G R SA +GD+++A VK P++ R ++ AVIVR RK RR++G+ + F+DNA VI+N +G G+ + GPI +E D Sbjct: 8 LNVADNSGARELMCIRALGGSYR----ESANIGDVIIAVVKDALPNMPVKRSDIVRAVIVRTRKGIRRENGMAIRFDDNAAVIINKEGNPRGTRVFGPIARELRD 108
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RK14_ADICA (50S ribosomal protein L14, chloroplastic OS=Adiantum capillus-veneris GN=rpl14 PE=2 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 7.459e-13 Identity = 41/125 (32.80%), Postives = 76/125 (60.80%), Query Frame = 1 Query: 70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECADL-WPRIASAANAIV 432 + + + ++ AD++GA+ L I V G R A +GD+++A VK+ P++ R +V+ AV+VR R+ +R++G+ + F+DNA VI+N +G G+ I GP+ +E + + R+ S A ++ Sbjct: 2 IQIQSYLDVADNSGARKLMCIRVLGTGNR----KYADIGDIIIAVVKEAVPNMFLKRSEVVRAVVVRTRRGLKRRNGMVLEFDDNAAVIINQEGNPRGTRIFGPVARELRECNFARVVSLAPEVL 122
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_THEFY (50S ribosomal protein L14 OS=Thermobifida fusca (strain YX) GN=rplN PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 9.741e-13 Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKECAD-LWPRIASAANAIV 432 AD+TGAK L I V G GR A +GD ++ATVK P K ++ AV+VR K RR DG ++ F++NA V++ G+ G+ I GP+G+E D + RI S A ++ Sbjct: 11 ADNTGAKELLTIRVLGGSGRRY----ASIGDTIVATVKDALPGAGVKKGDIVKAVVVRTTKERRRPDGFYIRFDENAAVLIKDGGDPRGTRIFGPVGRELRDKKFMRIISLAPEVL 122
BLAST of CX293958 vs. ExPASy Swiss-Prot
Match: RL14_DESVV (50S ribosomal protein L14 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplN PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 9.741e-13 Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 1 Query: 70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNGSAITGPIGKE 384 + V +T+ AD++GAK + I V G R A VGD++M +VK+ P + K VM AVIVR K RR DG ++ F+ NA V++N +GE G+ I GP+ +E Sbjct: 2 IQVESTLQVADNSGAKKVACIKVLGGSHRRY----ATVGDIIMVSVKEAMPHCKVKKGDVMQAVIVRTAKEVRRADGSYIKFDSNAAVLLNKQGEPVGTRIFGPVARE 105 The following BLAST results are available for this feature:
BLAST of CX293958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 279
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293958 ID=CX293958; Name=CX293958; organism=Citrus clementina; type=EST; length=556bpback to top |