CX293967

Overview
NameCX293967
Unique NameCX293967
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length500
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_STAPU (Photosystem II reaction center protein I OS=Staurastrum punctulatum GN=psbI PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.770e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLF+FGFLSNDP RNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPTRNPGRKE 36          
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_ANTFO (Photosystem II reaction center protein I OS=Anthoceros formosae GN=psbI PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.770e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLF+FGFLSNDP RNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPKRNPGRKE 36          
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_ADICA (Photosystem II reaction center protein I OS=Adiantum capillus-veneris GN=psbI PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.770e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVY VVIFFVSLF+FGFLSNDPGRNPGR++
Sbjct:    1 MLTLKLFVYAVVIFFVSLFVFGFLSNDPGRNPGRKD 36          
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_WELMI (Photosystem II reaction center protein I OS=Welwitschia mirabilis GN=psbI PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.430e-12
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLK+FVYTVV FF+SLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKVFVYTVVTFFISLFLFGFLSNDPGRNPGRKE 36          
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_OEDCA (Photosystem II reaction center protein I OS=Oedogonium cardiacum GN=psbI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.398e-12
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLK+FVYTVV FFVSLF+FGFLSNDPGRNPG+ E
Sbjct:    1 MLTLKIFVYTVVTFFVSLFVFGFLSNDPGRNPGKRE 36          
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_CHLVU (Photosystem II reaction center protein I OS=Chlorella vulgaris GN=psbI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.398e-12
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLK+FVYTVV FFVSLFIFGFLSNDPGRNPG+ E
Sbjct:    1 MLTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPGQRE 36          
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_NEPOL (Photosystem II reaction center protein I OS=Nephroselmis olivacea GN=psbI PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.443e-11
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLK+FVYTVV FFVSLFIFGFLSNDPGRNPG ++
Sbjct:    1 MLTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPGTKD 36          
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_OLTVI (Photosystem II reaction center protein I OS=Oltmannsiellopsis viridis GN=psbI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPG 258
            MLTLK+FVYTVV FFVSLFIFGFLSNDPGRNPG
Sbjct:    1 MLTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPG 33          
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_CHLAT (Photosystem II reaction center protein I OS=Chlorokybus atmophyticus GN=psbI PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.443e-11
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLK+FVYTVVIFFVSLFIFGFLSNDP RNP R++
Sbjct:    1 MLTLKIFVYTVVIFFVSLFIFGFLSNDPARNPKRKD 36          
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_STIHE (Photosystem II reaction center protein I OS=Stigeoclonium helveticum GN=psbI PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.109e-11
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLK+FVYTVV FFV LF+FGFLSNDPGRNPG+ +
Sbjct:    1 MLTLKIFVYTVVTFFVCLFVFGFLSNDPGRNPGKRD 36          
The following BLAST results are available for this feature:
BLAST of CX293967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBI_STAPU3.770e-1291.67Photosystem II reaction center protein I OS=Staura... [more]
PSBI_ANTFO3.770e-1291.67Photosystem II reaction center protein I OS=Anthoc... [more]
PSBI_ADICA3.770e-1288.89Photosystem II reaction center protein I OS=Adiant... [more]
PSBI_WELMI6.430e-1286.11Photosystem II reaction center protein I OS=Welwit... [more]
PSBI_OEDCA8.398e-1286.11Photosystem II reaction center protein I OS=Oedogo... [more]
PSBI_CHLVU8.398e-1288.89Photosystem II reaction center protein I OS=Chlore... [more]
PSBI_NEPOL2.443e-1186.11Photosystem II reaction center protein I OS=Nephro... [more]
PSBI_OLTVI4.168e-1193.94Photosystem II reaction center protein I OS=Oltman... [more]
PSBI_CHLAT5.443e-1186.11Photosystem II reaction center protein I OS=Chloro... [more]
PSBI_STIHE7.109e-1180.56Photosystem II reaction center protein I OS=Stigeo... [more]

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Properties
Property NameValue
Genbank descriptionC05004B11SK FlavRip1 Citrus clementina cDNA clone C05004B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293967 ID=CX293967; Name=CX293967; organism=Citrus clementina; type=EST; length=500bp
AATTGTGTGAATTTAATTTATGAAAACGATTTTCTATTTAGAGAATCAAA
TTCTAAAAAGAACTTCATTTCTTGATGTCAAAATTGGATATGTAGTATAA
AAATAGAGAATCTATTCTCTTTTTCCTTTTCCCCAAAAACCTGATTTGGA
GATTGTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATT
CTTTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTA
ATCCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTA
TAAACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTA
AAAGTGTTCGCTAAAGGTAAATTTGAAAAATACCAAGCCATCGCCCGAAA
CGGAAAGAGAGGGATTCGAACCCTCGGTACGAATAACTCGTACACCGGAT
TAGCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAATAA
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