CX293967

Overview
NameCX293967
Unique NameCX293967
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length500
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_AMBTC (Photosystem II reaction center protein I OS=Amborella trichopoda GN=psbI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.611e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36          
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_CRYJA (Photosystem II reaction center protein I OS=Cryptomeria japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRKE 36          
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_PHYPA (Photosystem II reaction center protein I OS=Physcomitrella patens GN=psbI PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_MARPO (Photosystem II reaction center protein I OS=Marchantia polymorpha GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_HUPLU (Photosystem II reaction center protein I OS=Huperzia lucidula GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_CHAVU (Photosystem II reaction center protein I OS=Chara vulgaris GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_ANGEV (Photosystem II reaction center protein I OS=Angiopteris evecta GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_LEPVR (Photosystem II reaction center protein I OS=Lepidium virginicum GN=psbI PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLF FGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFKFGFLSNDPGRNPGREE 36          
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_CYCTA (Photosystem II reaction center protein I OS=Cycas taitungensis GN=psbI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.920e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            M TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MFTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRKE 36          
BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_JASNU (Photosystem II reaction center protein I OS=Jasminum nudiflorum GN=psbI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.296e-12
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPG+ E
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGQRE 36          
The following BLAST results are available for this feature:
BLAST of CX293967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBI_AMBTC2.611e-1397.22Photosystem II reaction center protein I OS=Ambore... [more]
PSBI_CRYJA3.410e-1397.22Photosystem II reaction center protein I OS=Crypto... [more]
PSBI_PHYPA4.453e-1394.44Photosystem II reaction center protein I OS=Physco... [more]
PSBI_MARPO4.453e-1394.44Photosystem II reaction center protein I OS=Marcha... [more]
PSBI_HUPLU4.453e-1394.44Photosystem II reaction center protein I OS=Huperz... [more]
PSBI_CHAVU4.453e-1394.44Photosystem II reaction center protein I OS=Chara ... [more]
PSBI_ANGEV4.453e-1394.44Photosystem II reaction center protein I OS=Angiop... [more]
PSBI_LEPVR7.596e-1397.22Photosystem II reaction center protein I OS=Lepidi... [more]
PSBI_CYCTA9.920e-1394.44Photosystem II reaction center protein I OS=Cycas ... [more]
PSBI_JASNU1.296e-1294.44Photosystem II reaction center protein I OS=Jasmin... [more]

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Properties
Property NameValue
Genbank descriptionC05004B11SK FlavRip1 Citrus clementina cDNA clone C05004B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293967 ID=CX293967; Name=CX293967; organism=Citrus clementina; type=EST; length=500bp
AATTGTGTGAATTTAATTTATGAAAACGATTTTCTATTTAGAGAATCAAA
TTCTAAAAAGAACTTCATTTCTTGATGTCAAAATTGGATATGTAGTATAA
AAATAGAGAATCTATTCTCTTTTTCCTTTTCCCCAAAAACCTGATTTGGA
GATTGTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATT
CTTTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTA
ATCCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTA
TAAACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTA
AAAGTGTTCGCTAAAGGTAAATTTGAAAAATACCAAGCCATCGCCCGAAA
CGGAAAGAGAGGGATTCGAACCCTCGGTACGAATAACTCGTACACCGGAT
TAGCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAATAA
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