CX293984

Overview
NameCX293984
Unique NameCX293984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length353
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_SCHPO (Elongation factor 2 OS=Schizosaccharomyces pombe GN=eft1 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.283e-22
Identity = 47/104 (45.19%), Postives = 74/104 (71.15%), Query Frame = 3
Query:   42 FSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353
            F+  ++EGP+ +E +R+ +F I+D  +  + +HRG GQIIPTARRV Y++ L+A+P + EPV+ VEIQ   + +  IY+VL+ +RGHV ++  + GTP Y +KA
Sbjct:  667 FAWASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKA 770          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_CANAL (Elongation factor 2 OS=Candida albicans GN=EFT2 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.594e-22
Identity = 47/104 (45.19%), Postives = 69/104 (66.35%), Query Frame = 3
Query:   42 FSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353
            F    +EGP+  E  R+V+  I+D  +  + +HRG GQIIPT RRV Y++ L+A P + EPV+ VEIQ P + +  IY+VL+ +RG V ++  +PGTP + VKA
Sbjct:  667 FQWATKEGPIFGENCRSVRVNILDVTLHADAIHRGGGQIIPTMRRVTYASMLLAEPAIQEPVFLVEIQCPENAIGGIYSVLNKKRGQVISEEQRPGTPLFTVKA 770          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_DICDI (Elongation factor 2 OS=Dictyostelium discoideum GN=efbA PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.306e-22
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 3
Query:   42 FSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353
            F    +EG +CDE +R ++F + D  +  + +HRG GQIIPTARRV Y+A L A+P L+EP+Y VEI  P + +  IY+VL+ RRG V  +  + G+P + VKA
Sbjct:  666 FQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKA 769          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_CHLKE (Elongation factor 2 OS=Chlorella kessleri PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.628e-21
Identity = 48/104 (46.15%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   42 FSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353
            F   ++EG L +E +R + F++ D  +  + +HRG GQIIPTARR  Y+A L A PRL+EPVY VEIQ P   +  +Y+VL+ +RG V  ++ +PGTP + +KA
Sbjct:  670 FQWASKEGVLAEENMRGIVFEVCDVVLHADAIHRGGGQIIPTARRSMYAAQLTAQPRLLEPVYLVEIQCPEQAMGGVYSVLNQKRGMVFEELQRPGTPIFNLKA 773          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_ENTHI (Elongation factor 2 OS=Entamoeba histolytica GN=EF-2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.644e-20
Identity = 41/104 (39.42%), Postives = 64/104 (61.54%), Query Frame = 3
Query:   42 FSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353
            F+    +G +C+E IR V+  + D ++  + +HRG  Q+IP ARR  ++  L   P L+EP+Y  EIQ P   +  IYTV+S RRG + ++  +PGTP + V+A
Sbjct:  665 FNNAMHDGVVCNEQIRGVRINLEDVKLHADAIHRGGAQMIPCARRCCFACVLTGAPSLLEPMYLAEIQCPESAIGGIYTVMSRRRGKIISEEQRPGTPLFNVRA 768          

HSP 2 Score: 23.0978 bits (48), Expect = 2.644e-20
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 2
Query:    8 LNAVKDSIVQGF 43
            LN VKDSIV GF
Sbjct:  654 LNEVKDSIVNGF 665          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_BLAHO (Elongation factor 2 OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.433e-19
Identity = 46/104 (44.23%), Postives = 61/104 (58.65%), Query Frame = 3
Query:   42 FSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353
            F      GP+ DEP RNV  K++D  +  + +HRG GQI+P ARRV     L A P L+EPV+  EIQ P      IY VL+ RRGHV  ++ + GTP   +K+
Sbjct:  691 FGAACAAGPIVDEPCRNVLCKLMDVTLHADSIHRGMGQIMPPARRVVLGTMLKAEPILVEPVFLCEIQVPRAVSGGIYGVLTRRRGHVFEEIDEVGTPMMNIKS 794          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_STAMF (Elongation factor 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fusA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.623e-15
Identity = 41/106 (38.68%), Postives = 61/106 (57.55%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIV 347
            + + F    REGPL  EP+R VK  + DA I  +P HRG GQI P  R   Y+  L A P L+EP+  ++I+ P++ +  I T+++ +RG +   V Q G  A I+
Sbjct:  566 IIQGFRLAMREGPLAMEPVRGVKVILHDAIIHEDPAHRGPGQIYPAVRNAIYAGMLTAKPTLLEPIQKLDIKAPMEYLGNITTIITKKRGKI-LQVLQQGAVARII 670          

HSP 2 Score: 21.557 bits (44), Expect = 1.623e-15
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 2
Query:    8 LNAVKDSIVQGFQ 46
            L  VKD+I+QGF+
Sbjct:  559 LREVKDTIIQGFR 571          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_METS5 (Elongation factor 2 OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=fusA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.883e-15
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIV 347
            + + +    REGPL  EPIR VK  + DA I  +P HRG  QI P  R   ++A LM+ P L+EP+  ++I+ P++ V  +  VLS +RG V  ++ Q G+ A I+
Sbjct:  567 MLQGYRLAMREGPLAHEPIRGVKVILHDATIHEDPAHRGPAQIYPAVRNAIFAAMLMSKPTLLEPLQKLDIRVPMEFVGNVTAVLSRKRGKV-LNMTQSGSVARIL 671          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_METKA (Elongation factor 2 OS=Methanopyrus kandleri GN=fusA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.883e-15
Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYI 344
            L + F     EGPL  EP R VK  +VDA I  +P+HRG  Q+IP  +R  Y   L+A   L+EP+ Y+ +  P D + A+   +  RRG +  ++ Q G    I
Sbjct: 1084 LIEGFEEAMEEGPLAKEPCRGVKVSLVDAEIHEDPVHRGPAQVIPAIKRAIYGGMLLADTHLLEPMQYIYVTVPQDYMGAVTKEIQGRRGTI-EEIQQEGDTVII 1187          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_DESMO (Elongation factor 2 OS=Desulfurococcus mobilis GN=fusA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.013e-15
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIV 347
            + + F    +EGPL  EP+R VK  + DA +  +P HRG  QI P  R   ++ FL A P ++EP+  ++I+TP++ +  I TV++ +RG +  +V Q  T A ++
Sbjct:  564 VIQGFRLAMKEGPLAMEPVRGVKVVLHDAVVHEDPAHRGPAQIFPAVRNAIFAGFLTAKPTILEPILKLDIRTPMEYIGNISTVITKKRGKL-IEVQQMETSARVI 668          

HSP 2 Score: 20.7866 bits (42), Expect = 6.013e-15
Identity = 6/13 (46.15%), Postives = 11/13 (84.62%), Query Frame = 2
Query:    8 LNAVKDSIVQGFQ 46
            L  +KD+++QGF+
Sbjct:  557 LREIKDTVIQGFR 569          
The following BLAST results are available for this feature:
BLAST of CX293984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
EF2_SCHPO4.283e-2245.19Elongation factor 2 OS=Schizosaccharomyces pombe G... [more]
EF2_CANAL5.594e-2245.19Elongation factor 2 OS=Candida albicans GN=EFT2 PE... [more]
EF2_DICDI7.306e-2246.15Elongation factor 2 OS=Dictyostelium discoideum GN... [more]
EF2_CHLKE1.628e-2146.15Elongation factor 2 OS=Chlorella kessleri PE=2 SV=... [more]
EF2_ENTHI2.644e-2039.42Elongation factor 2 OS=Entamoeba histolytica GN=EF... [more]
EF2_BLAHO4.433e-1944.23Elongation factor 2 OS=Blastocystis hominis PE=2 S... [more]
EF2_STAMF1.623e-1538.68Elongation factor 2 OS=Staphylothermus marinus (st... [more]
EF2_METS53.883e-1539.62Elongation factor 2 OS=Metallosphaera sedula (stra... [more]
EF2_METKA3.883e-1537.14Elongation factor 2 OS=Methanopyrus kandleri GN=fu... [more]
EF2_DESMO6.013e-1535.85Elongation factor 2 OS=Desulfurococcus mobilis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05004D08SK FlavRip1 Citrus clementina cDNA clone C05004D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293984 ID=CX293984; Name=CX293984; organism=Citrus clementina; type=EST; length=353bp
GAGCTTGCTGAATGCTGTTAAGGATTCCATTGTTCAAGGATTTCAGTAGG
GGCGCTCGAGAAGGACCCCTCTGTGATGAACCTATCAGAAATGTCAAGTT
TAAAATAGTCGATGCAAGGATTGCACCTGAACCGCTGCATCGAGGATCTG
GACAGATCATTCCCACAGCTCGACGTGTGGCTTATTCAGCTTTTCTTATG
GCTACCCCTCGGCTTATGGAACCGGTGTATTATGTTGAGATACAAACTCC
AATTGATTGTGTCTCTGCAATCTACACGGTGTTATCTACAAGGCGTGGAC
ATGTCACTGCCGATGTTCCTCAGCCAGGAACTCCAGCTTATATTGTTAAG
GCA
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