CX293999

Overview
NameCX293999
Unique NameCX293999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length571
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.592e-37
Identity = 77/141 (54.61%), Postives = 103/141 (73.05%), Query Frame = 1
Query:   55 MAMIPS--FFGSQHDSILDPFSFD-VWNPFKDFAFPSLSSRFPR-----ETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 453
            M++IP+  F   +  +I DPFS D +W+PF  F  PS  S  PR     ET+A  N R+DWKETPEAHVFK DL G+ KE+VK+++ED  VL+I+  R  E+E+KN+TWHRVERS G+F+R+FRLPEN K+DQV+A +E+G
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPF--FGLPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENG 139          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.348e-36
Identity = 75/157 (47.77%), Postives = 102/157 (64.97%), Query Frame = 1
Query:   85 QHDSILDPFSFDVWNPFKDFAFPSLSSR-------FPR----ETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 522
            +  ++ DPFS D+W+PF  F F S  S        FPR    ET+A    R+DWKETPEAHVFK D+ GL KE+VK++++D  +LQI+ +RN E+E+K + WHRVERS GKFLRRFRLP+N K +Q++AS+E+G                 +I+ISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.348e-36
Identity = 70/146 (47.95%), Postives = 97/146 (66.44%), Query Frame = 1
Query:   85 QHDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 522
            +  ++ DPFS D+W+PF       + +    +T+A  N R+DWKETPE+HVFK DL G+ KE+VK+++E+  VL I+  R+ E+EDKN+ WHRVERS G+F+RRFRLPEN K+DQV+A +E+G                 AIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.760e-36
Identity = 70/146 (47.95%), Postives = 97/146 (66.44%), Query Frame = 1
Query:   85 QHDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 522
            +  ++ DPFS D+W+PF       + +    +T+A  N R+DWKETPE+HVFK DL G+ KE+VK+++E+  VL I+  R+ E+EDKN+ WHRVERS G+F+RRFRLPEN K+DQV+A +E+G                 AIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.121e-36
Identity = 73/134 (54.48%), Postives = 96/134 (71.64%), Query Frame = 1
Query:   85 QHDSILDPFSFDVWNPFKDFAFPSLSSR-------FPR----ETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 453
            +  ++ DPFS D+W+PF  F F S S         FPR    ET+A    R+DWKETPEAHVFK D+ GL KE+VK+++ED  VLQI+ +R+ E+E+K + WHRVERS GKFLRRFRLPEN K +Q++AS+E+G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENG 138          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 5.121e-36
Identity = 76/150 (50.67%), Postives = 100/150 (66.67%), Query Frame = 1
Query:   85 QHDSILDPFSFDVWNPFKDFAFPSLS-SRFPRETS---AIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 522
            +  ++ DPFS D+W+PF  F F S S S FPR  S   A    R+DWKETPEAHVFK D+ GL KE+VK+++ED  VLQI+ +R  E+E+K + WHRVERS GKFLRRFRLPEN K +Q++AS+E+G                 +I+I+G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.490e-35
Identity = 75/147 (51.02%), Postives = 101/147 (68.71%), Query Frame = 1
Query:   85 QHDSILDPFSFDVWNPFKDFAFPSL-SSRFPRETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 522
            +  ++ DPF+ D W+PF D  F SL  +   R+T+A  N R+DWKETPE+HVFK DL G+ KE+VK+++E+  VL I+  R+ E+EDKN+ WHRVERS G+F+RRFRLPEN K+DQV+AS+E+G                 AIEISG
Sbjct:    5 RRSNVFDPFA-DFWDPF-DGVFRSLVPATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.793e-34
Identity = 73/149 (48.99%), Postives = 102/149 (68.46%), Query Frame = 1
Query:   85 QHDSILDPFSFDVW-NPFKDFA--FPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 522
            +  ++ DPF+ D+W +PF  F    P++S     ET+A  N R+DWKETPEAHVFKVDL G+ KE+VK+++ED  VL ++ +R+ E+EDKN+ WHRVERS GKF+RRFRLPE+ K+++V+A +E+G                 AIEISG
Sbjct:    5 RRSNVFDPFA-DLWADPFDTFRSIVPAISGG-SSETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.176e-34
Identity = 72/149 (48.32%), Postives = 96/149 (64.43%), Query Frame = 1
Query:  103 DPFSFDVWNPFKDFAF------PSLSSRFPRETS---AIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 522
            DPFS D+W+P   F F       S  S FPR  S   A    R+DWKETPE HVFK D+ GL KE+VK++++D  +LQI+ +R+ E+E+K++ WHRVERS GKFLRRFRLPEN K +Q++AS+E+G                 +I+ISG
Sbjct:   11 DPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.630e-32
Identity = 71/146 (48.63%), Postives = 98/146 (67.12%), Query Frame = 1
Query:   94 SILDPFSFDVW-NPFKDFA--FPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 522
            ++ DPF+ D+W +PF  F    P++S     ET+A  N RMDWKETPEAHVFK DL G+ KE+VK+++ED  VL ++ +R  E+EDKN+ WHRVERS GKF+RRFRL E+ K+++V+A +E+G                 AI+ISG
Sbjct:    8 NVFDPFA-DLWADPFDTFRSIVPAISGG-GSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          
The following BLAST results are available for this feature:
BLAST of CX293999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP11_CHERU1.592e-3754.6118.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS17A_ORYSJ1.348e-3647.7717.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16A_ORYSJ1.348e-3647.9516.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS16B_ORYSJ1.760e-3647.9516.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS181_ORYSJ5.121e-3654.4818.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS174_ORYSJ5.121e-3650.6717.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16C_ORYSJ1.490e-3551.0216.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS16A_WHEAT4.793e-3448.9916.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HS177_ORYSJ8.176e-3448.3217.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_WHEAT2.630e-3248.6316.9 kDa class I heat shock protein 2 OS=Triticum ... [more]

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Properties
Property NameValue
Genbank descriptionC05004F04SK FlavRip1 Citrus clementina cDNA clone C05004F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293999 ID=CX293999; Name=CX293999; organism=Citrus clementina; type=EST; length=571bp
AGCAACCAATCTAGTATCAAAACCTCACATTCTGTAAGCATTTATCAAGA
AAAAATGGCGATGATTCCAAGCTTCTTCGGTAGCCAGCATGACAGCATTT
TGGATCCCTTCTCTTTCGATGTTTGGAACCCGTTCAAGGACTTTGCTTTC
CCCTCACTTTCCTCTCGATTCCCTCGAGAAACCTCAGCTATTGTTAACAC
TCGCATGGACTGGAAGGAAACCCCAGAAGCTCACGTATTCAAGGTGGATC
TTGCAGGTCTTACGAAAGAGGACGTGAAGCTCCAGATTGAAGACGACAGG
GTGCTTCAGATAACAGCAGACAGGAATGTTGAGAGGGAAGACAAGAATGA
GACATGGCATCGTGTAGAGCGCAGCAGAGGCAAGTTCTTGAGGAGGTTCA
GGTTGCCGGAGAATGGGAAGATTGATCAGGTTAGGGCTTCTATTGAGGAC
GGAGTTCTTACTGTTACAGTTCCTAAGGAAGAAGTGAAAAAACCTGAACT
CAAGGCCATTGAAATCTCTGGTTGAAGCAGTATATGTTTATGTACTAAGC
ATCGTGTTCTATATGTATACG
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