CX293999

Overview
NameCX293999
Unique NameCX293999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length571
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.546e-24
Identity = 63/147 (42.86%), Postives = 82/147 (55.78%), Query Frame = 1
Query:   94 SILDPFSFDVWNPFKDF-AFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVERE---DKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 522
            ++LDP S D W     F A  SL+ R P     + N R+DWKETP AHVF  DL G+ K+  K+++ED  VL I+ +R  E +     +E WH VERS GKF RRFRLP   ++DQV AS+++G                 AI ISG
Sbjct:    8 NVLDPMSVDFWADADPFGAVRSLAERCP----VLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.915e-23
Identity = 52/134 (38.81%), Postives = 85/134 (63.43%), Query Frame = 1
Query:   52 KMAMIPSFFGSQHDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 453
            K +++P F  S +  + D +S    +PF+              +  + + R+DWKETPE HV  VD+ GL K+D+K+++E++RVL+++ +R  E + K + WHRVERS GKF R+F+LP+N  +D V+A +E+G
Sbjct:   27 KASLLP-FIDSPNTLLSDLWSDRFPDPFRVLEQIPYGVEKHEPSITLSHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENG 159          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.481e-23
Identity = 45/89 (50.56%), Postives = 68/89 (76.40%), Query Frame = 1
Query:  187 AIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 453
            A+   R+DWKETPE HV  +D+ GL +E++K+++E++RVL+++ +R  E E K + WHRVERS GKF R+FRLP+N  +D V+A +E+G
Sbjct:   63 AMSPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENG 151          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.078e-21
Identity = 50/121 (41.32%), Postives = 78/121 (64.46%), Query Frame = 1
Query:   97 ILDPFSFDVWNPFKDFAFPSLSSRF-PRETSAIVNTRMDWKETPEAHVFKVDL-AGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 453
            + D  +FD WNPF  F     +  +   +TSA  NT ++ +ET EA+VF+ DL AG+ KE+V++++++  VL IT +R+V RE+K +  H +ERS   F  RF LP++  +D VRAS++ G
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADAWLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGG 126          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.354e-20
Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  100 LDPFSFDVWNPFKDF----AFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 453
            ++P S D+  PF D     AF +  S             MDWKET  AHVF  D+ G+ +E+V++++E+++VL+I+  R    E+K E WHRVERS  +F+R  RLP N   D V A++++G
Sbjct:   33 IEPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNG 154          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.768e-20
Identity = 51/122 (41.80%), Postives = 79/122 (64.75%), Query Frame = 1
Query:  118 DVW-----NPFKDFAFPSLSSRFP----RETS-AIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 453
            D+W     +PFK      +  R P    R+TS A+   R+DWKET E H   +D+ GL K++VK+++E++ VL+++ +R  E E K + WHRVERS GKF R+F+LP+N  ++ V+A +E+G
Sbjct:   40 DLWLDRFPDPFK------ILERIPLGLERDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENG 155          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.401e-17
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  301 VLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 522
            +LQI+ +RNVE+EDKN+TWHRVERS GKF+R FRLP+N K+DQV+AS+E+G                 AIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.830e-17
Identity = 41/100 (41.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:  169 FPRETSAIVN-TRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADR----NVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 453
            F R+  A+++  R+DW+ET +AH   VD+ G+ KED+++++ED+RVL+I+ +R      E++   + WHR ERS G+F R+ RLP+N  +D + AS+++G
Sbjct:   65 FDRDDVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNG 164          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.451e-16
Identity = 49/140 (35.00%), Postives = 78/140 (55.71%), Query Frame = 1
Query:   58 AMIPSFFGSQHDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIED-DRVLQITADR-------NVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 453
            A++P  +G   D   DPF     +P +  A    ++    E +A+   R DWKETPEAHV  VD+ G+ + DV++++++  RVL+++ +R         E E     WHR ER+ G+F RRFR+P    + +V A ++DG
Sbjct:   29 ALVPYGYGYMLD---DPFRVLEQSPLRP-AGGVAAAAAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDG 164          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.004e-15
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 1
Query:  160 SSRFPRETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 453
            S  + R+  A+  T  D KE P ++VF VD+ GL   D+K+Q+E+D VL I+ +R  E E +   + R+ER  GKF+R+F LPEN   D + A  +DG
Sbjct:   33 SKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDG 130          
The following BLAST results are available for this feature:
BLAST of CX293999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS166_ORYSJ1.546e-2442.8616.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_PEA2.915e-2338.8122.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP41_SOYBN8.481e-2350.5622.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HS17B_ORYSJ6.078e-2141.3217.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS189_ORYSJ1.354e-2039.3418.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP22_ARATH1.768e-2041.8022.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP12_SOYBN1.401e-1756.76Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS232_ORYSJ1.830e-1741.0023.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS219_ORYSJ3.451e-1635.0021.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE1.004e-1541.8417.3 kDa class II heat shock protein OS=Solanum pe... [more]

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Properties
Property NameValue
Genbank descriptionC05004F04SK FlavRip1 Citrus clementina cDNA clone C05004F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293999 ID=CX293999; Name=CX293999; organism=Citrus clementina; type=EST; length=571bp
AGCAACCAATCTAGTATCAAAACCTCACATTCTGTAAGCATTTATCAAGA
AAAAATGGCGATGATTCCAAGCTTCTTCGGTAGCCAGCATGACAGCATTT
TGGATCCCTTCTCTTTCGATGTTTGGAACCCGTTCAAGGACTTTGCTTTC
CCCTCACTTTCCTCTCGATTCCCTCGAGAAACCTCAGCTATTGTTAACAC
TCGCATGGACTGGAAGGAAACCCCAGAAGCTCACGTATTCAAGGTGGATC
TTGCAGGTCTTACGAAAGAGGACGTGAAGCTCCAGATTGAAGACGACAGG
GTGCTTCAGATAACAGCAGACAGGAATGTTGAGAGGGAAGACAAGAATGA
GACATGGCATCGTGTAGAGCGCAGCAGAGGCAAGTTCTTGAGGAGGTTCA
GGTTGCCGGAGAATGGGAAGATTGATCAGGTTAGGGCTTCTATTGAGGAC
GGAGTTCTTACTGTTACAGTTCCTAAGGAAGAAGTGAAAAAACCTGAACT
CAAGGCCATTGAAATCTCTGGTTGAAGCAGTATATGTTTATGTACTAAGC
ATCGTGTTCTATATGTATACG
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