CX293999

Overview
NameCX293999
Unique NameCX293999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length571
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  154 SLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 453
            S +  + R+  A+  T  D KE P A+ F VD+ GL   D+++Q+ED+RVL ++ +R  E  + +  + R+ER  GKF+R+F LP+N  +D+V A   DG
Sbjct:   40 SATRTYVRDARAMAATPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDG 139          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  172 PRETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQI-------TADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 453
            P   SA     MDW ETP +HV ++++ GL K+DVK+Q+ED  VL +        A++  ERE K+  WH  ER R +F R   LP   +++Q+RAS+++G
Sbjct:   21 PDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKERERE-KDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNG 120          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 40/98 (40.82%), Postives = 60/98 (61.22%), Query Frame = 1
Query:  160 SSRFPRETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 453
            S  + R+  A+  T  D KE P ++VF VD+ GL   D+K+Q+E D VL I+  RN E E +   + R+ER  GKF+++F LPE+   D++ A  +DG
Sbjct:   38 SRAYVRDARAMAATPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDG 135          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 1
Query:  205 MDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSR-----GKFLRRFRLPENGKIDQVRASIEDG 453
            +DW E+  +H+FK+++ G  KED+K+QIE+  VL I  +   E + +N  WH  ER        +FLRR  LPEN K+DQV+A +E+G
Sbjct:   24 IDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENG 111          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.450e-14
Identity = 37/95 (38.95%), Postives = 58/95 (61.05%), Query Frame = 1
Query:  169 FPRETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 453
            + R+  A+  T  D KE P ++VF++D+ GL   D+K+Q+EDD +L I  +R  + E +   + R+ER  GK +R+F LPEN   D + A  +DG
Sbjct:   40 YVRDAKAMAATPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDG 134          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.219e-14
Identity = 37/95 (38.95%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  169 FPRETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 453
            + R+  A+  T  D KE P ++VF VD+ G+   D+K+Q+ED+ VL I+ +R  E E +   + ++ER  GK +R+F LPEN  I+ + A  +DG
Sbjct:   33 YVRDAKAMAATPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDG 127          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.398e-14
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 1
Query:  130 PFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 453
            P  D A    +  + R+  A+  T  D KE   A+ F VD+ GL+  D+++Q+ED+RVL I+ +R  E E ++  + R+ER  GKF+R+F LP+N  +D+V A   DG
Sbjct:   23 PDGDKAGGGATRTYVRDARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRRE-EREDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDG 129          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.227e-13
Identity = 36/96 (37.50%), Postives = 62/96 (64.58%), Query Frame = 1
Query:  169 FPRETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVE-REDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 453
            + R+  A+  T  D  E P A+ F VD+ G+  +++K+Q+E+D VL ++ +R  E +E++   + R+ER  GKF+R+F+LPEN  +D++ A   DG
Sbjct:   35 YMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDG 130          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 35/97 (36.08%), Postives = 60/97 (61.86%), Query Frame = 1
Query:  169 FPRETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNE--TWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 453
            + R+  A+  T  D KE P ++VF  D+ G+   ++K+Q+EDD VL ++ +R    +D+ +   + R+ER  GKF+R+F LPEN  ++ + A  +DG
Sbjct:   46 YVRDAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDG 142          
BLAST of CX293999 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 39/92 (42.39%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  178 ETSAIVNTRMDWKETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 453
            +  A+  T  D KE P A+ F VD+ GL   D+K+Q+ED+RVL I+ +R  E E ++  + R+ER  GKF+R+F LP+N  +D++ A   DG
Sbjct:   46 DARAMAVTPADVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRRE-EREDAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDG 136          
The following BLAST results are available for this feature:
BLAST of CX293999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP22_MAIZE2.921e-1539.0017.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP16_ORYSJ2.921e-1540.5916.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HSP21_HELAN3.816e-1540.8217.9 kDa class II heat shock protein OS=Helianthus... [more]
HS157_ARATH3.816e-1543.1815.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
HSP21_SOYBN1.450e-1438.9517.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP21_PEA4.219e-1438.9517.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP23_MAIZE9.398e-1438.8917.0 kDa class II heat shock protein OS=Zea mays G... [more]
HS176_ARATH1.227e-1337.5017.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP22_IPONI2.734e-1336.0818.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_MAIZE2.734e-1342.3917.5 kDa class II heat shock protein OS=Zea mays P... [more]

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Properties
Property NameValue
Genbank descriptionC05004F04SK FlavRip1 Citrus clementina cDNA clone C05004F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293999 ID=CX293999; Name=CX293999; organism=Citrus clementina; type=EST; length=571bp
AGCAACCAATCTAGTATCAAAACCTCACATTCTGTAAGCATTTATCAAGA
AAAAATGGCGATGATTCCAAGCTTCTTCGGTAGCCAGCATGACAGCATTT
TGGATCCCTTCTCTTTCGATGTTTGGAACCCGTTCAAGGACTTTGCTTTC
CCCTCACTTTCCTCTCGATTCCCTCGAGAAACCTCAGCTATTGTTAACAC
TCGCATGGACTGGAAGGAAACCCCAGAAGCTCACGTATTCAAGGTGGATC
TTGCAGGTCTTACGAAAGAGGACGTGAAGCTCCAGATTGAAGACGACAGG
GTGCTTCAGATAACAGCAGACAGGAATGTTGAGAGGGAAGACAAGAATGA
GACATGGCATCGTGTAGAGCGCAGCAGAGGCAAGTTCTTGAGGAGGTTCA
GGTTGCCGGAGAATGGGAAGATTGATCAGGTTAGGGCTTCTATTGAGGAC
GGAGTTCTTACTGTTACAGTTCCTAAGGAAGAAGTGAAAAAACCTGAACT
CAAGGCCATTGAAATCTCTGGTTGAAGCAGTATATGTTTATGTACTAAGC
ATCGTGTTCTATATGTATACG
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