CX294010

Overview
NameCX294010
Unique NameCX294010
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: CP2BF_RAT (Cytochrome P450 2B15 OS=Rattus norvegicus GN=Cyp2b15 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 7.255e-15
Identity = 46/172 (26.74%), Postives = 82/172 (47.67%), Query Frame = 3
Query:    3 NVFVAGADTSAATVVWAMTYLMKNPRAMKKVQLEIRSLIGGNKGFVNEDDVQELHYLKAVVKETMRLQPTVPLLIPRETIQKCVIDGYAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFIDSCIDFKGQHFELIPFGAGRRICPGLNMGIATVDLALANLLYKFDWEMPL 518
            ++F  G +T++ T+ ++   ++K P   +KVQ EI  +IG ++     DD  ++ Y  AV+ E  R    +P+ +P       +  GY +P  T V+    +   DP  +++P+ F PE F+D     K      +PF  G+RIC G  +    + +    +L  F    P+
Sbjct:  295 SLFFTGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVIGSHR-LPTLDDRTKMPYTDAVIHEIQRFADLIPIGLPHRVTNDTMFLGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDVNGTLKKSE-AFLPFSTGKRICLGEGIAQNELFIFFTAILQNFSLASPV 464          
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: CP2B3_RAT (Cytochrome P450 2B3 OS=Rattus norvegicus GN=Cyp2b3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.255e-15
Identity = 46/171 (26.90%), Postives = 85/171 (49.71%), Query Frame = 3
Query:    6 VFVAGADTSAATVVWAMTYLMKNPRAMKKVQLEIRSLIGGNKGFVNEDDVQELHYLKAVVKETMRLQPTVPLLIPRETIQKCVIDGYAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFIDSCIDFKGQHFELIPFGAGRRICPGLNMGIATVDLALANLLYKFDWEMPL 518
            +F+AG ++++ T+ +    ++K P   +KVQ EI  +IG  +     DD  ++ Y +AV+ E  R     P+ +P    +  +  GY +P  T V+    +   DP+ +E P+ F PE F+D+    K +    +PF  G+R+C G  +  + + L    +L  +    P+
Sbjct:  295 LFLAGTESTSNTLCYGFLLMLKYPHVAEKVQKEIDQVIGSQR-VPTLDDRSKMPYTEAVIHEIQRFSDVSPMGLPCRITKDTLFRGYLLPKNTEVYFILSSALHDPQYFEQPDTFNPEHFLDANGALK-KCEAFMPFSIGKRMCLGEGIARSELFLFFTTILQNYSVSSPV 463          
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: CP2A6_HUMAN (Cytochrome P450 2A6 OS=Homo sapiens GN=CYP2A6 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 7.255e-15
Identity = 48/159 (30.19%), Postives = 83/159 (52.20%), Query Frame = 3
Query:    3 NVFVAGADTSAATVVWAMTYLMKNPRAMKKVQLEIRSLIGGNKGFVNEDDVQELHYLKAVVKETMRLQPTVPLLIPRETIQKCVIDGYAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFIDSCIDFKGQHFELIPFGAGRRICPGLNMGIATVDLAL 479
            N+F+ G +T + T+ +    LMK+P    KV  EI  +IG N+    ED  + + Y++AV+ E  R    +P+ + R   +      + +P  T V+    ++ RDP  + NP++F P+ F++    FK +    +PF  G+R C G   G+A ++L L
Sbjct:  297 NLFIGGTETVSTTLRYGFLLLMKHPEVEAKVHEEIDRVIGKNRQPKFEDRAK-MPYMEAVIHEIQRFGDVIPMSLARRVKKDTKFRDFFLPKGTEVYPMLGSVLRDPSFFSNPQDFNPQHFLNEKGQFK-KSDAFVPFSIGKRNCFG--EGLARMELFL 451          
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: CP238_MOUSE (Cytochrome P450 2C38 OS=Mus musculus GN=Cyp2c38 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.255e-15
Identity = 50/166 (30.12%), Postives = 81/166 (48.80%), Query Frame = 3
Query:    3 NVFVAGADTSAATVVWAMTYLMKNPRAMKKVQLEIRSLIGGNKGFVNEDDVQELHYLKAVVKETMRLQPTVPLLIPRETIQKCVIDGYAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFIDSCIDFKGQHFELIPFGAGRRICPGLNMGIATVDLALANLLYKF 500
            N+F AG +T++ T+ +A+  LMK P    KVQ EI  ++G ++    +D    + Y  A++ E  R    VP  +P           Y IP  T V  +  ++  D + + NPE F P  F+D+  +FK   +  + F AG+R+C G  +    + L L  +L  F
Sbjct:  293 NLFAAGTETTSTTLRYALLLLMKYPDVTAKVQEEIDHVVGRHRSPCMQDR-SHMPYTDAMIHEVQRFINLVPNNLPHAVTCDIKFRNYIIPKGTTVVTSLTSVLHDSKEFPNPEMFDPGHFLDANGNFKKSDY-FMTFSAGKRVCAGEGLARMELFLILTTILQNF 456          
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: CP6A8_DROME (Cytochrome P450 6a8 OS=Drosophila melanogaster GN=Cyp6a8 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 58/168 (34.52%), Postives = 86/168 (51.19%), Query Frame = 3
Query:    9 FVAGADTSAATVVWAMTYLMKNPRAMKKVQLEIRSLIGGNKGFVNEDDVQELHYLKAVVKETMRLQPTVPLLIPRETIQKCVIDG---YAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFIDSCIDFKGQ-HFELIPFGAGRRICPGLNMGIATVDLALANLLYKF 500
            F+AG +TS++T+ +A+  L KNP    KV+ E+  +I  +      +  ++L YL  V+ ET+RL   VP L  R   ++ V+ G   + I A   V + + AI  DP  +  P EF PERF  S  +  G+     +PFG G R C GL  G     + LA L+  F
Sbjct:  308 FIAGFETSSSTMGFALYELAKNPDIQDKVRAEVEEVIEQHDQNFTYECTKDLKYLNQVLDETLRLYTIVPNL-DRMAAKRYVVPGHPNFVIEAGQSVIIPSSAIHHDPSIYPEPFEFRPERF--SPEESAGRPSVAWLPFGDGPRNCIGLRFGQMQARIGLALLIRNF 472          
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: CP4C1_BLADI (Cytochrome P450 4C1 OS=Blaberus discoidalis GN=CYP4C1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 47/161 (29.19%), Postives = 80/161 (49.69%), Query Frame = 3
Query:   18 GADTSAATVVWAMTYLMKNPRAMKKVQLEIRSLIGGNKGFVNEDDVQELHYLKAVVKETMRLQPTVPLLIPRETIQKCVIDGYAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFIDSCIDFKGQHFELIPFGAGRRICPGLNMGIATVDLALANLLYKF 500
            G DT++A + WA+  L  +P    KV  E+  +  G+       D+ ++ YL+ V+KE++RL P+VP  I R   +   I  Y +PA   + +  + + R+ + + NPE F P+ F+   +  K   +  +PF AG R C G           L+++L  F
Sbjct:  315 GHDTTSAGICWALFLLGSHPEIQDKVYEELDHIFQGSDRSTTMRDLADMKYLERVIKESLRLFPSVP-FIGRVLKEDTKIGDYLVPAGCMMNLQIYHVHRNQDQYPNPEAFNPDNFLPERV-AKRHPYAYVPFSAGPRNCIGQKFATLEEKTVLSSILRNF 473          
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: CP46A_HUMAN (Cholesterol 24-hydroxylase OS=Homo sapiens GN=CYP46A1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 52/176 (29.55%), Postives = 88/176 (50.00%), Query Frame = 3
Query:    9 FVAGADTSAATVVWAMTYLMKNPRAMKKVQLEIRSLIGGNKGFVNEDDVQELHYLKAVVKETMRLQPTVP---LLIPRETIQKCVIDGYAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFIDSCIDFKGQHFELIPFGAGRRICPGLNMGIATVDLALANLLYKFDWEMPLGIR 527
            F+AG +TSA  + + +  L + P  + ++Q E+  +IG +K +++ +D+  L YL  V+KE++RL P       L+  ET+    IDG  +P  T +  + + +GR    +E+P  F P+RF           F   PF  G R C G       V + +A LL + ++ +  G R
Sbjct:  300 FIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVIG-SKRYLDFEDLGRLQYLSQVLKESLRLYPPAWGTFRLLEEETL----IDGVRVPGNTPLLFSTYVMGRMDTYFEDPLTFNPDRFGPGA---PKPRFTYFPFSLGHRSCIGQQFAQMEVKVVMAKLLQRLEFRLVPGQR 467          
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: CP2CE_RABIT (Cytochrome P450 2C14 OS=Oryctolagus cuniculus GN=CYP2C14 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 50/166 (30.12%), Postives = 81/166 (48.80%), Query Frame = 3
Query:    3 NVFVAGADTSAATVVWAMTYLMKNPRAMKKVQLEIRSLIGGNKGFVNEDDVQELHYLKAVVKETMRLQPTVPLLIPRETIQKCVIDGYAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFIDSCIDFKGQHFELIPFGAGRRICPGLNMGIATVDLALANLLYKF 500
            +VF AG +T++ T+ + +  LMK+P    KVQ EI  +IG ++    +D    + Y  A V E  R    VP  +P  T        Y IP  T V  +  ++  D + +  P++F P  F+D+  +FK   +  +PF  G+R+C G  +    + L L  +L  F
Sbjct:  293 DVFAAGTETTSTTLRYGLLLLMKHPEVTAKVQEEIERVIGRHRSPCMQDR-SRMPYTDATVHEIQRYINLVPNNVPHATTCNVKFRNYFIPKGTAVLTSLTSVLHDNQEFLKPDKFDPGHFLDASGNFKKSDY-FMPFSTGKRVCMGEALARMELFLFLTAILQNF 456          
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: CP2AD_HUMAN (Cytochrome P450 2A13 OS=Homo sapiens GN=CYP2A13 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 49/171 (28.65%), Postives = 82/171 (47.95%), Query Frame = 3
Query:    3 NVFVAGADTSAATVVWAMTYLMKNPRAMKKVQLEIRSLIGGNKGFVNEDDVQELHYLKAVVKETMRLQPTVPLLIPRETIQKCVIDGYAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFIDSCIDFKGQHFELIPFGAGRRICPGLNMGIATVDLALANLLYKFDWEMP 515
            N+F AG +T + T+ +    LMK+P    KV  EI  +IG N+    ED  + + Y +AV+ E  R    +P+ +     +      + +P  T VF    ++ RDP  + NP +F P+ F+D    FK +    +PF  G+R C G  +    + L    ++  F ++ P
Sbjct:  297 NLFFAGTETVSTTLRYGFLLLMKHPEVEAKVHEEIDRVIGKNRQPKFEDRAK-MPYTEAVIHEIQRFGDMLPMGLAHRVNKDTKFRDFFLPKGTEVFPMLGSVLRDPRFFSNPRDFNPQHFLDKKGQFK-KSDAFVPFSIGKRYCFGEGLARMELFLFFTTIMQNFRFKSP 465          
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: CP2AA_RABIT (Cytochrome P450 2A10 OS=Oryctolagus cuniculus GN=CYP2A10 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 49/159 (30.82%), Postives = 80/159 (50.31%), Query Frame = 3
Query:    3 NVFVAGADTSAATVVWAMTYLMKNPRAMKKVQLEIRSLIGGNKGFVNEDDVQELHYLKAVVKETMRLQPTVPLLIPRETIQKCVIDGYAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFIDSCIDFKGQHFELIPFGAGRRICPGLNMGIATVDLAL 479
            N+F AG +T + T+ +    LMK+P    KV  EI  +IG N+    ED  + + Y +AV+ E  R    +P+ +     +      + +P    VF    ++ +DP+ +  P EFYP+ F+D    FK +    +PF  G+R C  L  G+A ++L L
Sbjct:  297 NLFFAGTETVSTTMRYGFLLLMKHPDVEAKVHEEIDRVIGRNRQPKFEDRAK-MPYTEAVIHEIQRFTDMIPMGLAHRVTRDTKFRDFLLPKGAEVFPMLGSVLKDPKFFSKPREFYPQHFLDEKGQFK-KSDAFMPFSVGKRYC--LGEGLARMELFL 451          
The following BLAST results are available for this feature:
BLAST of CX294010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CP2BF_RAT7.255e-1526.74Cytochrome P450 2B15 OS=Rattus norvegicus GN=Cyp2b... [more]
CP2B3_RAT7.255e-1526.90Cytochrome P450 2B3 OS=Rattus norvegicus GN=Cyp2b3... [more]
CP2A6_HUMAN7.255e-1530.19Cytochrome P450 2A6 OS=Homo sapiens GN=CYP2A6 PE=1... [more]
CP238_MOUSE7.255e-1530.12Cytochrome P450 2C38 OS=Mus musculus GN=Cyp2c38 PE... [more]
CP6A8_DROME9.475e-1534.52Cytochrome P450 6a8 OS=Drosophila melanogaster GN=... [more]
CP4C1_BLADI9.475e-1529.19Cytochrome P450 4C1 OS=Blaberus discoidalis GN=CYP... [more]
CP46A_HUMAN9.475e-1529.55Cholesterol 24-hydroxylase OS=Homo sapiens GN=CYP4... [more]
CP2CE_RABIT9.475e-1530.12Cytochrome P450 2C14 OS=Oryctolagus cuniculus GN=C... [more]
CP2AD_HUMAN9.475e-1528.65Cytochrome P450 2A13 OS=Homo sapiens GN=CYP2A13 PE... [more]
CP2AA_RABIT9.475e-1530.82Cytochrome P450 2A10 OS=Oryctolagus cuniculus GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC05004G05SK FlavRip1 Citrus clementina cDNA clone C05004G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294010 ID=CX294010; Name=CX294010; organism=Citrus clementina; type=EST; length=535bp
TGAACGTATTCGTTGCTGGAGCAGACACGAGTGCAGCAACTGTGGTTTGG
GCCATGACTTACTTAATGAAGAATCCTAGAGCAATGAAAAAAGTTCAACT
GGAAATCAGATCGTTGATTGGGGGCAACAAAGGCTTTGTAAATGAAGATG
ATGTTCAAGAACTACATTATCTTAAGGCGGTAGTGAAGGAGACAATGAGA
TTGCAACCCACGGTGCCGTTACTAATCCCAAGAGAAACAATTCAAAAGTG
CGTAATAGATGGGTATGCAATACCAGCTAAAACACGTGTCTTTGTAAATG
CATGGGCGATAGGAAGAGACCCTGAAGCTTGGGAGAATCCGGAGGAATTT
TATCCGGAGAGATTCATTGATAGCTGTATTGACTTTAAAGGGCAGCACTT
TGAATTAATACCGTTTGGTGCTGGCAGAAGAATTTGTCCTGGGTTGAATA
TGGGAATCGCAACTGTGGATCTTGCACTTGCTAATCTTCTTTACAAATTT
GATTGGGAAATGCCGCTTGGAATAAGAGCCATGAC
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