CX294010

Overview
NameCX294010
Unique NameCX294010
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig776 contig Ccv1_Contig776:353..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: CP4FB_HUMAN (Cytochrome P450 4F11 OS=Homo sapiens GN=CYP4F11 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.703e-14
Identity = 50/162 (30.86%), Postives = 80/162 (49.38%), Query Frame = 3
Query:   18 GADTSAATVVWAMTYLMKNPRAMKKVQLEIRSLIGGNKGFVNE-DDVQELHYLKAVVKETMRLQPTVPLLIPRETIQKCVIDGYAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFIDSCIDFKGQHFELIPFGAGRRICPGLNMGIATVDLALANLLYKF 500
            G DT+A+ + W + +L K+P   ++ + E++ L+   +    E DD+ +L +L   +KE++RL P VP++    T    + DG  IP      +N   I  +P  W +PE + P RF    I  +      IPF AG R C G    +A + + LA  L  F
Sbjct:  329 GHDTTASGLSWVLYHLAKHPEYQEQCRQEVQELLKDREPIEIEWDDLAQLPFLTMCIKESLRLHPPVPVISRCCTQDFVLPDGRVIPKGIVCLINIIGIHYNPTVWPDPEVYDPFRFNQENIKERSP-LAFIPFSAGPRNCIGQAFAMAEMKVVLALTLLHF 489          
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: CP4F2_HUMAN (Leukotriene-B(4) omega-hydroxylase 1 OS=Homo sapiens GN=CYP4F2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.703e-14
Identity = 48/162 (29.63%), Postives = 80/162 (49.38%), Query Frame = 3
Query:   18 GADTSAATVVWAMTYLMKNPRAMKKVQLEIRSLIGGNKGFVNE-DDVQELHYLKAVVKETMRLQPTVPLLIPRETIQKCVIDGYAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFIDSCIDFKGQHFELIPFGAGRRICPGLNMGIATVDLALANLLYKF 500
            G DT+A+ + W + +L K+P   ++ + E++ L+   +    E DD+  L +L   +KE++RL P VP++    T    + DG  IP      ++ +    +P  W +PE + P RF    I  +      IPF AG R C G    +A + + LA  L +F
Sbjct:  329 GHDTTASGLSWVLYHLAKHPEYQERCRQEVQELLKDREPKEIEWDDLAHLPFLTMCMKESLRLHPPVPVISRHVTQDIVLPDGRVIPKGIICLISVFGTHHNPAVWPDPEVYDPFRFDPENIKERSP-LAFIPFSAGPRNCIGQTFAMAEMKVVLALTLLRF 489          
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: CP4D8_DROME (Cytochrome P450 4d8 OS=Drosophila melanogaster GN=Cyp4d8 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.703e-14
Identity = 51/175 (29.14%), Postives = 95/175 (54.29%), Query Frame = 3
Query:   18 GADTSAATVVWAMTYLMKNPRAMKKVQLEIRSLIGGNKGF-VNEDDVQELHYLKAVVKETMRLQPTVPLLIPR-ETIQK---CVIDGYAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFIDSCIDFKGQHFELIPFGAGRRICPGLNMGIATVDLALANLLYKFDWEMPLGIR 527
            G DT+ + + + +  L ++P    K+  EI  ++G ++   V+  D+ EL Y++ V+KE++R+ P VP++  + +T  K    V     IPA + + +  + + R PE + NP+EF PER  +     +   F++IPF AG R C G       + + LA ++ +++  +P+G R
Sbjct:  268 GHDTTTSALSFCLHELSRHPEVQAKMLEEIVQVLGTDRSRPVSIRDLGELKYMECVIKESLRMYPPVPIVGRKLQTDFKYTHSVHGDGVIPAGSEIIIGIFGVHRQPETFPNPDEFIPERHENGS---RVAPFKMIPFSAGPRNCIGQKFAQLEMKMMLAKIVREYEL-LPMGQR 438          
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: CP4CA_MOUSE (Cytochrome P450 4A12A OS=Mus musculus GN=Cyp4a12a PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.703e-14
Identity = 44/162 (27.16%), Postives = 76/162 (46.91%), Query Frame = 3
Query:   18 GADTSAATVVWAMTYLMKNPRAMKKVQLEIRSLIGGNKGFVNEDDVQELHYLKAVVKETMRLQPTVPLLIPRETIQKCVIDGYAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFIDSCIDFKGQHFELIPFGAGRRICPGLNMGIATVDLALANLLYKFD 503
            G DT+A+ + W    L  NP   ++ + EI+SL+G     +  +D+ ++ Y    +KE +R+ P VP +    +      DG ++P    V ++ + +  +P  W NPE F P RF              +PF  G R C G    +  + +A+A  L +F+
Sbjct:  320 GHDTTASGISWIFYALATNPEHQQRCRKEIQSLLGDGTS-ITWNDLDKMPYTTMCIKEALRIYPPVPSVSRELSSPVTFPDGRSLPKGIHVMLSFYGLHHNPTVWPNPEVFDPSRFAPGS---SRHSHSFLPFSGGARNCIGKQFAMNELKVAVALTLLRFE 477          
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: CP4B1_RAT (Cytochrome P450 4B1 OS=Rattus norvegicus GN=Cyp4b1 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 4.703e-14
Identity = 47/166 (28.31%), Postives = 84/166 (50.60%), Query Frame = 3
Query:   18 GADTSAATVVWAMTYLMKNPRAMKKVQLEIRSLIGGNKGFVNEDDVQELHYLKAVVKETMRLQPTVPLLIPRETIQKCVIDGYAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFIDSCIDFKGQH-FELIPFGAGRRICPGLNMGIATVDLALANLLYKFDWEM 512
            G DT+ + + W +  +   P   +  + E+R ++G    F   DD+ ++ YL   +KE  RL P VP +  +       +DG ++PA + + ++ +A+ R+   W +PE F P RF  S  +  G+H F  +PF AG R C G    +  + +  A  L +F++ +
Sbjct:  316 GHDTTTSGISWFLYCMALYPEHQQLCREEVRGILGDQDSF-QWDDLAKMTYLTMCMKECFRLYPPVPQVYRQLNKPVTFVDGRSLPAGSLISLHIYALHRNSTVWPDPEVFDPLRF--SPENAAGRHPFAFMPFSAGPRNCIGQQFAMNEMKVVTALCLLRFEFSL 478          
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: CP4B1_HUMAN (Cytochrome P450 4B1 OS=Homo sapiens GN=CYP4B1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.703e-14
Identity = 44/165 (26.67%), Postives = 84/165 (50.91%), Query Frame = 3
Query:   18 GADTSAATVVWAMTYLMKNPRAMKKVQLEIRSLIGGNKGFVNEDDVQELHYLKAVVKETMRLQPTVPLLIPRETIQKCVIDGYAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFIDSCIDFKGQHFELIPFGAGRRICPGLNMGIATVDLALANLLYKFDWEM 512
            G DT+ + + W +  +   P    + + E+R ++G ++ F   DD+ ++ YL   +KE+ RL P VP +  + +     +DG ++PA + + ++ +A+ R+   W +PE F   RF       K   F  +PF AG R C G    ++ + +  A  L +F++ +
Sbjct:  316 GHDTTTSGISWFLYCMALYPEHQHRCREEVREILG-DQDFFQWDDLGKMTYLTMCIKESFRLYPPVPQVYRQLSKPVTFVDGRSLPAGSLISMHIYALHRNSAVWPDPEVFDSLRFSTENAS-KRHPFAFMPFSAGPRNCIGQQFAMSEMKVVTAMCLLRFEFSL 478          
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: CP4AL_PIG (Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus scrofa GN=CYP4A21 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.703e-14
Identity = 47/165 (28.48%), Postives = 82/165 (49.70%), Query Frame = 3
Query:   15 AGADTSAATVVWAMTYLMKNPRAMKKVQLEIRSLIGGNKGFVNEDDVQELHYLKAVVKETMRLQPTVPLLIPRETIQKCVI-DGYAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFIDSCIDFKGQH-FELIPFGAGRRICPGLNMGIATVDLALANLLYKFD 503
            AG D++A+ + W +  L  NP   ++ + EI+ L+G     +  D + ++ Y    +KE +RL P VP  + RE  +     DG ++PA   + ++ + +  +P+ W NPEEF P RF         +H    +PF  G R C G    +  + + +A  L +F+
Sbjct:  315 AGHDSTASGISWVLYALASNPEHQQRCREEIQGLLGDGTS-ITWDHLDQMPYTTMCIKEALRLYPPVPS-VGRELSKPITFPDGRSLPAGIILSLSIYGLHHNPQVWPNPEEFDPSRFAPG----SARHSHAFMPFSGGSRNCIGKQFAMNEMKVVVALTLLRFE 473          
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: CP241_CANFA (Cytochrome P450 2C41 OS=Canis familiaris GN=CYP2C41 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.703e-14
Identity = 49/166 (29.52%), Postives = 81/166 (48.80%), Query Frame = 3
Query:    3 NVFVAGADTSAATVVWAMTYLMKNPRAMKKVQLEIRSLIGGNKGFVNEDDVQELHYLKAVVKETMRLQPTVPLLIPRETIQKCVIDGYAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFIDSCIDFKGQHFELIPFGAGRRICPGLNMGIATVDLALANLLYKF 500
            ++F AG +T++ T+ + +  L+K+P    KVQ EI  +IG ++   +  D   + Y  AV+ E  R    VP  +P           Y IP  T + ++  ++  D + +  PE F P  F+D   +FK   +  + F AG+RIC G  +    + L L  +L KF
Sbjct:  292 DLFGAGTETTSTTLRYGLLLLLKHPEVTVKVQEEIDRVIGRHQS-PHMQDRSRMPYTNAVLHEIQRYIDLVPNSLPHAVTCDVKFRNYVIPKGTTILISLSSVLSDEKEFPRPEIFDPAHFLDDSGNFKKSDY-FMAFSAGKRICVGEGLARMELFLFLTTILQKF 455          
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: CP1A2_CHICK (Cytochrome P450 1A2 (Fragment) OS=Gallus gallus GN=CYP1A2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.703e-14
Identity = 42/124 (33.87%), Postives = 69/124 (55.65%), Query Frame = 3
Query:    3 NVFVAGADTSAATVVWAMTYLMKNPRAMKKVQ-LEIRSLIGGNK-GFVNEDDVQELHYLKAVVKETMRLQPTVPLLIPRETIQKCVIDGYAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFI 368
            ++F AG DT    + W++ YL+  P + KK+Q  E+ + IG  +  +++E  +  L Y +A + ET+     VP  IP  T +   ++G+ IP +  VFVN W +  + E WE+P  F  ERF+
Sbjct:   50 DIFGAGFDTVTTALSWSLMYLVTQPHSQKKIQESELDTAIGRERRSWLSERSM--LPYKEAFILETVPTWQFVPFTIPHSTTRDTTLNGFHIPKECCVFVNQWQVNHEAELWEDPFVFRTERFL 171          
BLAST of CX294010 vs. ExPASy Swiss-Prot
Match: C6A21_DROME (Probable cytochrome P450 6a21 OS=Drosophila melanogaster GN=Cyp6a21 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.703e-14
Identity = 52/171 (30.41%), Postives = 86/171 (50.29%), Query Frame = 3
Query:    9 FVAGADTSAATVVWAMTYLMKNPRAMKKVQLEIRSLIGGNKGFVNEDDVQELHYLKAVVKETMRLQPTVPLLIPRETIQKCVIDG---YAIPAKTRVFVNAWAIGRDPEAWENPEEFYPERFIDSCIDFKGQHFELIPFGAGRRICPGLNMGIATVDLALANLLYKFDWEM 512
            F AG +TS+ T+ +A+  L +N     +V+ E + +I    G +N + +++L YL  VV ET+RL   +P+L  RE ++   + G   Y I     V +   A+ RD + + NP  F P+ F    +  +    E +PFG G R C G+  G     + LA L+  F + +
Sbjct:  306 FAAGFETSSTTMGFALYELAQNQDIQNRVRKECQEVIEKCNGELNYESMKDLVYLDQVVSETLRLYTVLPVL-NRECLEDYEVPGHPKYVIKKGMPVLIPCGAMHRDEKLYANPNTFNPDNFSPERVK-ERDSVEWLPFGDGPRNCIGMRFGQMQARIGLALLIKDFKFSV 474          
The following BLAST results are available for this feature:
BLAST of CX294010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CP4FB_HUMAN4.703e-1430.86Cytochrome P450 4F11 OS=Homo sapiens GN=CYP4F11 PE... [more]
CP4F2_HUMAN4.703e-1429.63Leukotriene-B(4) omega-hydroxylase 1 OS=Homo sapie... [more]
CP4D8_DROME4.703e-1429.14Cytochrome P450 4d8 OS=Drosophila melanogaster GN=... [more]
CP4CA_MOUSE4.703e-1427.16Cytochrome P450 4A12A OS=Mus musculus GN=Cyp4a12a ... [more]
CP4B1_RAT4.703e-1428.31Cytochrome P450 4B1 OS=Rattus norvegicus GN=Cyp4b1... [more]
CP4B1_HUMAN4.703e-1426.67Cytochrome P450 4B1 OS=Homo sapiens GN=CYP4B1 PE=1... [more]
CP4AL_PIG4.703e-1428.48Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus s... [more]
CP241_CANFA4.703e-1429.52Cytochrome P450 2C41 OS=Canis familiaris GN=CYP2C4... [more]
CP1A2_CHICK4.703e-1433.87Cytochrome P450 1A2 (Fragment) OS=Gallus gallus GN... [more]
C6A21_DROME4.703e-1430.41Probable cytochrome P450 6a21 OS=Drosophila melano... [more]

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Properties
Property NameValue
Genbank descriptionC05004G05SK FlavRip1 Citrus clementina cDNA clone C05004G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294010 ID=CX294010; Name=CX294010; organism=Citrus clementina; type=EST; length=535bp
TGAACGTATTCGTTGCTGGAGCAGACACGAGTGCAGCAACTGTGGTTTGG
GCCATGACTTACTTAATGAAGAATCCTAGAGCAATGAAAAAAGTTCAACT
GGAAATCAGATCGTTGATTGGGGGCAACAAAGGCTTTGTAAATGAAGATG
ATGTTCAAGAACTACATTATCTTAAGGCGGTAGTGAAGGAGACAATGAGA
TTGCAACCCACGGTGCCGTTACTAATCCCAAGAGAAACAATTCAAAAGTG
CGTAATAGATGGGTATGCAATACCAGCTAAAACACGTGTCTTTGTAAATG
CATGGGCGATAGGAAGAGACCCTGAAGCTTGGGAGAATCCGGAGGAATTT
TATCCGGAGAGATTCATTGATAGCTGTATTGACTTTAAAGGGCAGCACTT
TGAATTAATACCGTTTGGTGCTGGCAGAAGAATTTGTCCTGGGTTGAATA
TGGGAATCGCAACTGTGGATCTTGCACTTGCTAATCTTCTTTACAAATTT
GATTGGGAAATGCCGCTTGGAATAAGAGCCATGAC
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