CX294030

Overview
NameCX294030
Unique NameCX294030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_GLOMM (Superoxide dismutase [Mn], mitochondrial OS=Glossina morsitans morsitans GN=Sod2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.223e-22
Identity = 52/122 (42.62%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            I+W+NL+P        P + L  AI+  F S E   + +SA    + GSGW WLG + + K+L++   +NQ+PL      LVPL  IDVWEHAYYLQ KN    Y++  W++ NWK  SD Y
Sbjct:   94 IYWQNLSPTKS----EPSADLKKAIEEQFSSFEQFKKDLSALSIGVQGSGWGWLGYNKKXKKLQILAVSNQEPLQA-VTGLVPLFAIDVWEHAYYLQXKNXXAKYVEAXWDIANWKBISDRY 210          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_MYCLP (Superoxide dismutase [Mn] OS=Mycobacterium lepraemurium GN=sodA PE=3 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 4.209e-22
Identity = 54/115 (46.96%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 345
            ++WKNL+P    GG+ P   L  AID  FGS +    + SA    L GSGW  LG DT   RL      +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:   78 LWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_MYCFO (Superoxide dismutase [Mn] OS=Mycobacterium fortuitum GN=sodA PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.209e-22
Identity = 54/122 (44.26%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            I+WKNL+P    GG+ P   L  AID  FGS +    + +A    L GSGW  LG D+   RL      +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW+   + Y
Sbjct:   78 IWWKNLSP---NGGDKPTGDLAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGDRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNWEDVQNRY 194          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_STRP3 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M3 GN=sodA PE=3 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 7.179e-22
Identity = 50/123 (40.65%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 369
            +FW+ L+P  +       S +  AID  FGS +A  ++ +A      GSGW WL ++ E  +LE+ +TANQD  +++     P+L +DVWEHAYYL Y+NV+P+Y+K  + ++NWK  S++YQ
Sbjct:   83 LFWELLSPEKQD----VTSDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYYLNYRNVRPNYIKAFFEIINWKKVSELYQ 198          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_STAES (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sodA PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.179e-22
Identity = 51/122 (41.80%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            +FW+ L+P  E  GE         I   +GSL+   ++ + + AA  GSGW WL ++    +LE+ TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+  +++Y
Sbjct:   83 LFWELLSPNSEEKGEVVDK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYINAFWNVVNWEKVNELY 195          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_STAEQ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sodA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.179e-22
Identity = 51/122 (41.80%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            +FW+ L+P  E  GE         I   +GSL+   ++ + + AA  GSGW WL ++    +LE+ TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+  +++Y
Sbjct:   83 LFWELLSPNSEEKGEVVDK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYINAFWNVVNWEKVNELY 195          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_NOCAS (Superoxide dismutase [Mn] OS=Nocardia asteroides GN=sodA PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 7.179e-22
Identity = 54/124 (43.55%), Postives = 71/124 (57.26%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 372
            I+WKNL+P    GG+ P   L  AID  FGS +    + +A    L GSGW  LG DT  ++L      +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+   WNV+NW    D + K
Sbjct:   78 IWWKNLSP---NGGDKPVGELAAAIDDQFGSFDKFRAQFTAAANGLQGSGWAVLGYDTLGQKLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVTAFWNVVNWADVQDRFGK 196          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_STRR6 (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=sodA PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 9.376e-22
Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            +FW+ + P        P + L  AID  FGS E      +A      GSGW WL ++ E K LEV +TANQD  +++     P+LG+DVWEHAYY++Y+NV+PDY+K  ++V+NW    ++Y
Sbjct:   83 LFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGLDVWEHAYYVKYRNVRPDYIKAFFSVINWNKVDELY 197          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_STRPN (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae GN=sodA PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 9.376e-22
Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 366
            +FW+ + P        P + L  AID  FGS E      +A      GSGW WL ++ E K LEV +TANQD  +++     P+LG+DVWEHAYY++Y+NV+PDY+K  ++V+NW    ++Y
Sbjct:   83 LFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGLDVWEHAYYVKYRNVRPDYIKAFFSVINWNKVDELY 197          
BLAST of CX294030 vs. ExPASy Swiss-Prot
Match: SODM_MYCLE (Superoxide dismutase [Mn] OS=Mycobacterium leprae GN=sodA PE=3 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 9.376e-22
Identity = 53/115 (46.09%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    1 IFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALHGSGWVWLGLDTEFKRLEVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 345
            I+WKNL+P    GG+ P   L   ID  FGS +    + SA    L GSGW  LG DT   +L      +Q   V+    ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:   78 IWWKNLSP---NGGDKPTGGLATDIDETFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGNKLLTFQLYDQQANVSLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 187          
The following BLAST results are available for this feature:
BLAST of CX294030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
SODM_GLOMM3.223e-2242.62Superoxide dismutase [Mn], mitochondrial OS=Glossi... [more]
SODM_MYCLP4.209e-2246.96Superoxide dismutase [Mn] OS=Mycobacterium lepraem... [more]
SODM_MYCFO4.209e-2244.26Superoxide dismutase [Mn] OS=Mycobacterium fortuit... [more]
SODM_STRP37.179e-2240.65Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STAES7.179e-2241.80Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STAEQ7.179e-2241.80Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_NOCAS7.179e-2243.55Superoxide dismutase [Mn] OS=Nocardia asteroides G... [more]
SODM_STRR69.376e-2241.80Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_STRPN9.376e-2241.80Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_MYCLE9.376e-2246.09Superoxide dismutase [Mn] OS=Mycobacterium leprae ... [more]

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Properties
Property NameValue
Genbank descriptionC05005A08SK FlavRip1 Citrus clementina cDNA clone C05005A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294030 ID=CX294030; Name=CX294030; organism=Citrus clementina; type=EST; length=570bp
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCACGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGAGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACCTACAGTACAAGAAT
GTCAAACCAGATTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTA
TGCTAGTGATGTGTATCAGAAAGAATGCCCTTAAGCTTGGAGCTCTTCCT
TGAGCATGGAGTTCTTCGTTTGATCTGGGTTCTCTCTTGGGTTCAAGAGA
CGAATATCCTTGCAGCTTTTCACGCTGAAGTGACAATAAAACGATATTTT
GCACATGATGACAGACACCCTTTCTTATGCAGTGAGTGTTACTTGTGTAT
CATTATGTGACATCCAAATA
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