CX294034

Overview
NameCX294034
Unique NameCX294034
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig162 contig Ccv1_Contig162:2..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294034 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 280.026 bits (715), Expect = 4.355e-75
Identity = 141/158 (89.24%), Postives = 145/158 (91.77%), Query Frame = 2 
Query:   41 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 514
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+T
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 158
[Close]
BLAST of CX294034 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 280.026 bits (715), Expect = 4.355e-75
Identity = 141/158 (89.24%), Postives = 145/158 (91.77%), Query Frame = 2 
Query:   41 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 514
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+T
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 158
[Close]
BLAST of CX294034 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 280.026 bits (715), Expect = 4.355e-75
Identity = 141/158 (89.24%), Postives = 145/158 (91.77%), Query Frame = 2 
Query:   41 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 514
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+T
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 158
[Close]
BLAST of CX294034 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 280.026 bits (715), Expect = 4.355e-75
Identity = 141/158 (89.24%), Postives = 145/158 (91.77%), Query Frame = 2 
Query:   41 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 514
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+T
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 158
[Close]
BLAST of CX294034 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 280.026 bits (715), Expect = 4.355e-75
Identity = 141/158 (89.24%), Postives = 145/158 (91.77%), Query Frame = 2 
Query:   41 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 514
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+T
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 158
[Close]
BLAST of CX294034 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 5.688e-75
Identity = 140/158 (88.61%), Postives = 145/158 (91.77%), Query Frame = 2 
Query:   41 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 514
            MG  F  LF  LF K+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL RML EDELRDAVLLVFANKQDLP AMNAAE+TDKLGLHSLR R WYIQ+T
Sbjct:    1 MGNVFGSLFKGLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQAT 158
[Close]
BLAST of CX294034 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 278.1 bits (710), Expect = 1.655e-74
Identity = 133/158 (84.18%), Postives = 148/158 (93.67%), Query Frame = 2 
Query:   41 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 514
            MG+SF+KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE+VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF+NT+G+IFVVDSNDR R+ EAR+ L RMLNEDE+R+AVLLVFANKQDLP AM+AAEIT+KLGLHS+RQR WYIQ+T
Sbjct:    1 MGVSFSKLFSNLFGHKEMRILMVGLDGAGKTTVLYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRIAEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMSAAEITEKLGLHSIRQRPWYIQAT 158
[Close]
BLAST of CX294034 vs. ExPASy Swiss-Prot
Match: ARF2_DROME (ADP-ribosylation factor 2 OS=Drosophila melanogaster GN=Arf102F PE=1 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 1.401e-73
Identity = 135/158 (85.44%), Postives = 143/158 (90.51%), Query Frame = 2 
Query:   41 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 514
            MGL+ + L +RLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+ EA  EL  ML EDELRDAVLLVFANKQDLPNAM AAE+TDKL L+ LR RHW+IQST
Sbjct:    1 MGLTISSLLTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRITEAERELQNMLQEDELRDAVLLVFANKQDLPNAMTAAELTDKLRLNQLRNRHWFIQST 158
[Close]
BLAST of CX294034 vs. ExPASy Swiss-Prot
Match: ARF_CANAL (ADP-ribosylation factor OS=Candida albicans GN=ARF1 PE=3 SV=4)

HSP 1 Score: 273.092 bits (697), Expect = 5.324e-73
Identity = 132/158 (83.54%), Postives = 147/158 (93.04%), Query Frame = 2 
Query:   41 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 514
            MGL+ +KLF+ L  ++EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR+YFQNTQG+IFVVDSNDRDR+ EAR+EL  MLNEDEL+DAVLLV ANKQDLPNAMNAAEIT+K+GLHS+  R W+IQ+T
Sbjct:    1 MGLTISKLFASLLGRREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRYYFQNTQGIIFVVDSNDRDRINEAREELQSMLNEDELKDAVLLVLANKQDLPNAMNAAEITEKMGLHSIMNRPWFIQAT 158
[Close]
BLAST of CX294034 vs. ExPASy Swiss-Prot
Match: ARF5_RAT (ADP-ribosylation factor 5 OS=Rattus norvegicus GN=Arf5 PE=1 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 1.549e-72
Identity = 132/158 (83.54%), Postives = 144/158 (91.14%), Query Frame = 2 
Query:   41 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQST 514
            MGL+ + LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV E+ DEL +ML EDELRDAVLLVFANKQD+PNAM  +E+TDKLGL  LR R WY+Q+T
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQAT 158
The following BLAST results are available for this feature:
BLAST of CX294034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF3_RAT4.355e-7589.24ADP-ribosylation factor 3 OS=Rattus norvegicus GN=... [more]
ARF3_PONAB4.355e-7589.24ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ... [more]
ARF3_MOUSE4.355e-7589.24ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]
ARF3_HUMAN4.355e-7589.24ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
ARF3_BOVIN4.355e-7589.24ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARF12_CAEEL5.688e-7588.61ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF_ASHGO1.655e-7484.18ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARF2_DROME1.401e-7385.44ADP-ribosylation factor 2 OS=Drosophila melanogast... [more]
ARF_CANAL5.324e-7383.54ADP-ribosylation factor OS=Candida albicans GN=ARF... [more]
ARF5_RAT1.549e-7283.54ADP-ribosylation factor 5 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05005B02SK FlavRip1 Citrus clementina cDNA clone C05005B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294034 ID=CX294034; Name=CX294034; organism=Citrus clementina; type=EST; length=514bp
CTCGTGCCGAATTCGGCACGAGGTCGTGAGATAACAGAAAATGGGGCTGT
CATTTACGAAGCTTTTTAGCCGGCTTTTTGCCAAGAAAGAGATGCGAATT
CTGATGGTGGGTCTCGACGCTGCTGGTAAGACCACCATTTTGTACAAGCT
CAAGCTCGGTGAGATTGTGACAACCATTCCTACCATTGGTTTCAACGTGG
AGACTGTGGAATATAAGAACATTAGCTTCACTGTTTGGGATGTTGGGGGT
CAGGATAAGATTCGTCCTTTGTGGAGACATTACTTCCAAAACACTCAAGG
GCTTATCTTTGTGGTTGATAGCAATGATCGTGACCGTGTGGTTGAAGCTA
GAGATGAACTGCACCGGATGCTGAATGAGGATGAGTTGAGGGATGCTGTG
CTGCTTGTTTTTGCCAACAAGCAAGATCTTCCAAATGCCATGAATGCTGC
AGAGATCACTGATAAGCTTGGTCTTCACTCACTTCGTCAACGCCACTGGT
ACATCCAGAGCACA
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