CX294038

Overview
NameCX294038
Unique NameCX294038
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length530
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10581 contig Ccv1_Contig10581:583..1103. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.075e-22
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGGAGDV +VS+KGS++GWQAMS NWG NWQ+ + L+GQ LSF+VTASDGRTVTS+NV P+ W
Sbjct:  174 NVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGW 237          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.710e-22
Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGG G + SVSIKGS+TGW AMSRNWG NWQSN+YL+GQSLSF+VT+SDG+T+T  +V PA W
Sbjct:  185 NVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGW 248          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.294e-21
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGGAG + SVSIKGSKTGW AMSRNWG NWQSN+YL+GQ+LSF +T +DG T    NVVP++W
Sbjct:  177 NVGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSW 240          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.139e-20
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NV GAGD++ VS+KGSKT W  MSRNWGQNWQSN+ L GQSLSF+VTASD R+ TS NV PA W
Sbjct:  186 NVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATW 249          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.139e-20
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NV GAGD+   S+KGSKTGW +++RNWGQNWQSN+ L GQSLSF+VT+SD RT TS N+ P+NW
Sbjct:  184 NVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNW 247          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.537e-20
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NV GAGDV  VS+KGS T W  +SRNWGQNWQSN+ L GQSLSF+V  SDGR+ TSNN+ P+NW
Sbjct:  182 NVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNW 245          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.537e-20
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NV GAGD+   S+KGS+TGW ++SRNWGQNWQSN+ L GQ+LSF+VT SD RT TS N+VP+NW
Sbjct:  181 NVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNW 244          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.313e-20
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGG+G V  VSIKGSKT W AMSRNWGQNWQSN+YLN QSLSF+V   D R VT  N+ P+NW
Sbjct:  173 NVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKVKLDDAREVTVWNIAPSNW 236          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 4.327e-20
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGG+G V  +SIKGS TGW AMSRNWG NWQSN+YL GQSLSF V   DGR VT+ NV P+NW
Sbjct:  179 NVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQSLSFIVQLDDGRKVTAWNVAPSNW 242          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.651e-20
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTG------WQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGGAGDV S+++KGS +G      WQ MSRNWGQNWQSN+YL+G++LSF+VTA DGR++T  +V PA W
Sbjct:  179 NVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVTAGDGRSLTCADVAPAGW 248          
The following BLAST results are available for this feature:
BLAST of CX294038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EXP11_ORYSJ2.075e-2271.88Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA1_ORYSJ2.710e-2271.88Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP11_ARATH2.294e-2170.31Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXPA3_ARATH1.139e-2071.88Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXP16_ARATH1.139e-2067.19Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA9_ARATH2.537e-2068.75Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA4_ARATH2.537e-2067.19Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXP33_ORYSJ3.313e-2070.31Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA3_ORYSJ4.327e-2070.31Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ORYSJ5.651e-2062.86Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionC05005B09SK FlavRip1 Citrus clementina cDNA clone C05005B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294038 ID=CX294038; Name=CX294038; organism=Citrus clementina; type=EST; length=530bp
CTCGTGCCGAATTCGGCACGAGGAAATGTCGGAGGAGCAGGAGATGTACA
TTCAGTATCAATCAAGGGTTCAAAGACTGGATGGCAAGCAATGTCAAGGA
ACTGGGGCCAAAATTGGCAGAGCAATTCTTATCTTAACGGCCAAAGTCTT
TCTTTCCAAGTGACAGCCAGTGACGGCAGGACTGTGACTAGCAACAATGT
TGTGCCTGCAAATTGGCAATTTGGGCAAACCTTTGAGGGTGGTCAGTTTT
AGATTTTAAGATTTTAAAAAAGTGAATCAGAAATTGTATATTTAATTGAA
TTTGGCATTGTGTTTGTGAGGGAGAAAGGGTGAGAATAGGGGTAGGTGAG
GCTGAGGCCTGGCCGATGTGGCCTGTCTTGTTGCTGTGGTGGTCTGTTGG
CACCCGCTAGGCCTCTATAAATAGAAATGATTGTGTTCTATATATAGTTA
TTACTCCAATTGAATGAACGGGTATAATTTCATTCAACGTTGTGATTTCT
GGTTATCTTTTGAGACATCAATTAAAAGTT
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