CX294038

Overview
NameCX294038
Unique NameCX294038
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length530
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10581 contig Ccv1_Contig10581:583..1103. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.639e-20
Identity = 42/65 (64.62%), Postives = 53/65 (81.54%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGGAGDVH+V++K  ++  WQA+SRNWGQNWQS + L+GQ+LSF+VT  DGR+V SNN VP  W
Sbjct:  215 NVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGW 279          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.805e-19
Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NV GAGD+   S+KG+ TGW  MSRNWGQNWQSNS L GQ+LSF+VT SD RT TS N  PA W
Sbjct:  188 NVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGW 251          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.160e-19
Identity = 43/67 (64.18%), Postives = 51/67 (76.12%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIK---GSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGGAGDVH+V++K   G K  WQAM+RNWGQNWQS + L+GQ+LSF VT  D R+V S NV PA W
Sbjct:  186 NVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNWQSGALLDGQALSFTVTTGDRRSVVSYNVAPAGW 252          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.160e-19
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGG G + SV IKG+KTGW  MSRNWG NWQ+N+YLN Q++SF VT++ G+T+   +V P+NW
Sbjct:  174 NVGGPGSIKSVQIKGTKTGWVTMSRNWGANWQANNYLNNQAISFSVTSTAGKTLVFEDVAPSNW 237          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.066e-18
Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NV GAG++  + +KG+ T W  MSRNWGQNWQSNS L GQSLSF+VT+SD R+ TS N+ PANW
Sbjct:  181 NVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANW 244          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.392e-18
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGG+G V  + IKGS TGW AMSRNWG NWQSN+ L+GQ+LSF+V A DGR VT+ +V PA W
Sbjct:  175 NVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFRVQADDGRVVTAADVAPAGW 238          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.818e-18
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGGAGDV SV IKG+++GW +M RNWGQ W  NS   GQ LSF++T+SDG+T+T+ NVVP  W
Sbjct:  181 NVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEW 244          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.908e-18
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NV G+GD+ +V IKGS+TGW  M RNWGQNW  N+ L  Q+LSF+VT+SD  TVTS NV P NW
Sbjct:  189 NVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNW 252          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.010e-17
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NV G+G V +  +KGS T W +MSRNWG+NWQSN+YL GQ+LSF+V A DG  VT+ +V PANW
Sbjct:  177 NVAGSGAVAAAWVKGSGTEWLSMSRNWGENWQSNAYLTGQALSFRVQADDGGVVTAYDVAPANW 240          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 5.848e-17
Identity = 37/64 (57.81%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGGAGD+  + +KG KTGW  M +NWGQNW +   L GQ +SF+VT SDG T   NNV+P NW
Sbjct:  201 NVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNW 264          
The following BLAST results are available for this feature:
BLAST of CX294038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EXPA5_ORYSJ9.639e-2064.62Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA7_ORYSJ2.805e-1967.19Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP21_ORYSJ8.160e-1964.18Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ORYSJ8.160e-1959.38Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA6_ARATH1.066e-1864.06Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA8_ORYSJ1.392e-1865.63Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP10_ORYSJ1.818e-1862.50Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH6.908e-1862.50Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXPA9_ORYSJ2.010e-1760.94Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP25_ARATH5.848e-1757.81Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC05005B09SK FlavRip1 Citrus clementina cDNA clone C05005B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294038 ID=CX294038; Name=CX294038; organism=Citrus clementina; type=EST; length=530bp
CTCGTGCCGAATTCGGCACGAGGAAATGTCGGAGGAGCAGGAGATGTACA
TTCAGTATCAATCAAGGGTTCAAAGACTGGATGGCAAGCAATGTCAAGGA
ACTGGGGCCAAAATTGGCAGAGCAATTCTTATCTTAACGGCCAAAGTCTT
TCTTTCCAAGTGACAGCCAGTGACGGCAGGACTGTGACTAGCAACAATGT
TGTGCCTGCAAATTGGCAATTTGGGCAAACCTTTGAGGGTGGTCAGTTTT
AGATTTTAAGATTTTAAAAAAGTGAATCAGAAATTGTATATTTAATTGAA
TTTGGCATTGTGTTTGTGAGGGAGAAAGGGTGAGAATAGGGGTAGGTGAG
GCTGAGGCCTGGCCGATGTGGCCTGTCTTGTTGCTGTGGTGGTCTGTTGG
CACCCGCTAGGCCTCTATAAATAGAAATGATTGTGTTCTATATATAGTTA
TTACTCCAATTGAATGAACGGGTATAATTTCATTCAACGTTGTGATTTCT
GGTTATCTTTTGAGACATCAATTAAAAGTT
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