CX294038

Overview
NameCX294038
Unique NameCX294038
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length530
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10581 contig Ccv1_Contig10581:583..1103. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.148e-15
Identity = 37/65 (56.92%), Postives = 51/65 (78.46%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTA-SDGRTVTSNNVVPANW 216
            NVGGAGD+ S+++KGS+T W +MS NWG ++Q+ S L GQSLSF+VT+ + G T+ + NV PANW
Sbjct:  185 NVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANW 249          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.219e-14
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGG G V SV+++GSK   W  M+RNWG NWQS+  L GQ LSF+VT +D +T T  NVVP++W
Sbjct:  174 NVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSW 238          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.716e-14
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            N+ G+G + S+S+KGS TGW  M+RNWG NWQ  + L GQ+LSF VT++ G+T+  ++ VPA W
Sbjct:  172 NMAGSGSIASMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGW 235          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.548e-14
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            N+ G+G + S+S+KGS TGW  M+RNWG NWQ  + L GQ+LSF VT++ G+T+  ++ VPA W
Sbjct:  163 NMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGW 226          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.348e-13
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NV G+G V +VS++G+ TGW  MSRNWG NWQS + L GQ LSF VT + G+ +   +V PA W
Sbjct:  178 NVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGW 241          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.922e-13
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NV   G + S+ I GS  T W  M RNWG NW S SYL GQ+LSF+VT  DG+T+   N+VP+ W
Sbjct:  185 NVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGW 249          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.123e-13
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGGAGDV  +S+KG+K   W  + RNWGQ WQ++  L G+SL+F+V   D R  TS +V+P +W
Sbjct:  192 NVGGAGDVAGLSVKGNKRVKWTPLKRNWGQEWQTSEVLTGESLTFRVMTGDHRKATSWHVLPPDW 256          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.123e-13
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVG  G+V  V +KG  T W  M+RNWGQNW S+  L GQSLSF+VT   G+T+ S +V P  W
Sbjct:  180 NVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYW 243          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.123e-13
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVG AG + ++ +KGSK+  W AM+ NWG  W S +YL GQ LSF+VT +DG+T+   NVV   W
Sbjct:  185 NVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGW 249          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NV G+G V S  IKG+ TGW  MSRNWG NWQS + L GQ+LSF VT + G+ +   +V PA W
Sbjct:  179 NVAGSGSVASAWIKGTNTGWIQMSRNWGANWQSLAGLAGQALSFAVTTTGGQYLQFQDVAPAWW 242          
The following BLAST results are available for this feature:
BLAST of CX294038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EXPA7_ARATH7.148e-1556.92Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP12_ARATH1.219e-1456.92Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP19_ORYSJ2.716e-1451.56Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ORYSJ3.548e-1451.56Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ1.348e-1353.13Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP14_ORYSJ3.922e-1352.31Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP32_ORYSJ5.123e-1350.77Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ARATH5.123e-1353.13Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP13_ORYSJ5.123e-1350.77Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP31_ORYSJ6.691e-1354.69Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionC05005B09SK FlavRip1 Citrus clementina cDNA clone C05005B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294038 ID=CX294038; Name=CX294038; organism=Citrus clementina; type=EST; length=530bp
CTCGTGCCGAATTCGGCACGAGGAAATGTCGGAGGAGCAGGAGATGTACA
TTCAGTATCAATCAAGGGTTCAAAGACTGGATGGCAAGCAATGTCAAGGA
ACTGGGGCCAAAATTGGCAGAGCAATTCTTATCTTAACGGCCAAAGTCTT
TCTTTCCAAGTGACAGCCAGTGACGGCAGGACTGTGACTAGCAACAATGT
TGTGCCTGCAAATTGGCAATTTGGGCAAACCTTTGAGGGTGGTCAGTTTT
AGATTTTAAGATTTTAAAAAAGTGAATCAGAAATTGTATATTTAATTGAA
TTTGGCATTGTGTTTGTGAGGGAGAAAGGGTGAGAATAGGGGTAGGTGAG
GCTGAGGCCTGGCCGATGTGGCCTGTCTTGTTGCTGTGGTGGTCTGTTGG
CACCCGCTAGGCCTCTATAAATAGAAATGATTGTGTTCTATATATAGTTA
TTACTCCAATTGAATGAACGGGTATAATTTCATTCAACGTTGTGATTTCT
GGTTATCTTTTGAGACATCAATTAAAAGTT
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