CX294038

Overview
NameCX294038
Unique NameCX294038
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length530
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10581 contig Ccv1_Contig10581:583..1103. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 34/65 (52.31%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NV   G + S+ I GS  T W  M RNWG NW S SYL GQ LSF+VT  DG+T+   N+VP+ W
Sbjct:  201 NVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGW 265          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.491e-12
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NV G+G + SV +KG  T    +SRNWG NWQS++ L GQ+L+F VT++ G+T+   N+VPA W
Sbjct:  183 NVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWW 246          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.947e-12
Identity = 33/65 (50.77%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGR-TVTSNNVVPANW 216
            NVGG GD+ ++++KGS+TGW  MS NWG ++Q+ S L GQSLSF++T+   R T+ + N  PA+W
Sbjct:  180 NVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASW 244          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.542e-12
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NV  AG + S+ + GS T  W  M+RNWG  W S +YL GQ LSF+VT +D +T+   NVVP  W
Sbjct:  190 NVAAAGSIKSMEVMGSNTADWMPMARNWGAQWHSLAYLTGQGLSFRVTNTDDQTLVFTNVVPPGW 254          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGGAG V ++ IKG++T W AM +NWGQ W +   L GQ LSF++T SDG      +V P +W
Sbjct:  236 NVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDW 299          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NV   G + S+ + GS  T W  M RNWG NW S SYL GQ LSF+VT  DG+T+   N+VP+ W
Sbjct:  203 NVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGW 267          
BLAST of CX294038 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.179e-11
Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   25 NVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSNNVVPANW 216
            NVGGAGDV  +++KG+K   W  + R+WGQ W++ + L G+SL+F+V   D R  TS  V P +W
Sbjct:  214 NVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDW 278          
The following BLAST results are available for this feature:
BLAST of CX294038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EXP24_ORYSJ6.691e-1352.31Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP15_ORYSJ1.491e-1250.00Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ARATH1.947e-1250.77Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP23_ORYSJ2.542e-1249.23Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ARATH4.337e-1250.00Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP22_ORYSJ4.337e-1250.77Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ8.179e-1146.15Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionC05005B09SK FlavRip1 Citrus clementina cDNA clone C05005B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294038 ID=CX294038; Name=CX294038; organism=Citrus clementina; type=EST; length=530bp
CTCGTGCCGAATTCGGCACGAGGAAATGTCGGAGGAGCAGGAGATGTACA
TTCAGTATCAATCAAGGGTTCAAAGACTGGATGGCAAGCAATGTCAAGGA
ACTGGGGCCAAAATTGGCAGAGCAATTCTTATCTTAACGGCCAAAGTCTT
TCTTTCCAAGTGACAGCCAGTGACGGCAGGACTGTGACTAGCAACAATGT
TGTGCCTGCAAATTGGCAATTTGGGCAAACCTTTGAGGGTGGTCAGTTTT
AGATTTTAAGATTTTAAAAAAGTGAATCAGAAATTGTATATTTAATTGAA
TTTGGCATTGTGTTTGTGAGGGAGAAAGGGTGAGAATAGGGGTAGGTGAG
GCTGAGGCCTGGCCGATGTGGCCTGTCTTGTTGCTGTGGTGGTCTGTTGG
CACCCGCTAGGCCTCTATAAATAGAAATGATTGTGTTCTATATATAGTTA
TTACTCCAATTGAATGAACGGGTATAATTTCATTCAACGTTGTGATTTCT
GGTTATCTTTTGAGACATCAATTAAAAGTT
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