CX294045

Overview
NameCX294045
Unique NameCX294045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C45_ORYSJ (Probable protein phosphatase 2C 45 OS=Oryza sativa subsp. japonica GN=Os04g0659500 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.809e-24
Identity = 53/91 (58.24%), Postives = 71/91 (78.02%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHH 283
            GVLA+SRAFG+++LKQ+VV +PEI +  +    E L+LASDGLWDVV NE+AV + R+  +PE AA+KL + A+ R S+DNITC+VVRF H
Sbjct:  184 GVLAVSRAFGDKLLKQYVVVDPEIREEVIDHSLEFLILASDGLWDVVTNEEAVDMTRSIHDPEEAAKKLLQEAYKRESSDNITCVVVRFLH 274          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C10_ORYSJ (Probable protein phosphatase 2C 10 OS=Oryza sativa subsp. japonica GN=Os02g0149800 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.106e-23
Identity = 52/89 (58.43%), Postives = 71/89 (79.78%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 277
            GVLA+SRAFG+++LKQ+VVA+PEI +  V    E L+LASDGLWDVV N++AV + R  ++PE AA++L + A+ RGSADNIT ++VRF
Sbjct:  240 GVLAVSRAFGDKLLKQYVVADPEIKEEIVDSSLEFLILASDGLWDVVSNKEAVDMVRPIQDPEQAAKRLLQEAYQRGSADNITVVIVRF 328          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C11_ARATH (Probable protein phosphatase 2C 11 OS=Arabidopsis thaliana GN=At1g43900 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.857e-22
Identity = 50/89 (56.18%), Postives = 68/89 (76.40%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 277
            G+LA+SRAFG++ LK +V+AEPEI + ++    E +V+ASDGLW+V+ N+DAVA+ R   + E AARKL +  + RGS DNITCIVVRF
Sbjct:  281 GILAVSRAFGDKQLKPYVIAEPEIQEEDI-STLEFIVVASDGLWNVLSNKDAVAIVRDISDAETAARKLVQEGYARGSCDNITCIVVRF 368          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C44_ORYSJ (Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.409e-17
Identity = 39/89 (43.82%), Postives = 64/89 (71.91%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 277
            G LA++RAFG++ LK  + +EP++  + +    E ++LASDGLW V+ N++AV L ++ ++P+ AA++LT  A  R S D+I+CIV+RF
Sbjct:  231 GQLAVARAFGDQSLKAHLSSEPDVRHVPINSSIEFVILASDGLWKVMKNQEAVDLVKSIKDPQAAAKRLTTEALARKSKDDISCIVIRF 319          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C41_ORYSJ (Probable protein phosphatase 2C 41 OS=Oryza sativa subsp. japonica GN=Os04g0451900/Os04g0452000 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 7.409e-17
Identity = 44/89 (49.44%), Postives = 64/89 (71.91%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 277
            G LA+SRAFG+R LK  + +EP+I   ++    ELLVLASDGLW V+ N++ V +A+  ++P+ AA++LT  A  R S D+I+C+VVRF
Sbjct:  194 GQLAVSRAFGDRNLKSLLKSEPDIKVEDIDYTAELLVLASDGLWKVMNNQEVVDVAKRFKDPQAAAKQLTAEALKRDSKDDISCVVVRF 282          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C09_ARATH (Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.651e-16
Identity = 42/89 (47.19%), Postives = 65/89 (73.03%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 277
            G LA+SRAFG++ LK  + +EP+I +  V    ++L+LASDG+W V+ NE+A+ +AR  ++P+ AA++LT  A  R S D+I+C+VVRF
Sbjct:  192 GQLAVSRAFGDKGLKTHLSSEPDIKEATVDSQTDVLLLASDGIWKVMTNEEAMEIARRVKDPQKAAKELTAEALRRESKDDISCVVVRF 280          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C10_ARATH (Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.272e-16
Identity = 41/88 (46.59%), Postives = 64/88 (72.73%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVR 274
            G LA+SRAFG++ LK  + ++P++ D  + +  ++LVLASDGLW V+ N++A+ +AR  ++P  AA++LT  A  R S D+I+CIVVR
Sbjct:  193 GQLAVSRAFGDKSLKTHLRSDPDVKDSSIDDHTDVLVLASDGLWKVMANQEAIDIARRIKDPLKAAKELTTEALRRDSKDDISCIVVR 280          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C62_ORYSJ (Probable protein phosphatase 2C 62 OS=Oryza sativa subsp. japonica GN=Os07g0507000 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.384e-15
Identity = 40/89 (44.94%), Postives = 63/89 (70.79%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 277
            G LA++RAFG+R LK+ + +EP++ +  + E  + L+LASDGLW V+ N++AV   +  ++ + AA+ LTE A  R S D+I+CIVV+F
Sbjct:  200 GQLAVARAFGDRSLKKHLSSEPDVVEEPIDENTDFLILASDGLWKVMSNQEAVDEIKDFKDAQAAAKHLTEQAVNRKSKDDISCIVVKF 288          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C17_ARATH (Probable protein phosphatase 2C 17 OS=Arabidopsis thaliana GN=At1g78200 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.113e-15
Identity = 40/89 (44.94%), Postives = 64/89 (71.91%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 277
            G+LA+SR FG++ LK ++ +EPEI D+ +    + L+LASDG+  V+ N++AV +A+  ++P+ AAR++   A  R S D+I+CIVVRF
Sbjct:  194 GLLAVSRVFGDKNLKAYLNSEPEIKDVTIDSHTDFLILASDGISKVMSNQEAVDVAKKLKDPKEAARQVVAEALKRNSKDDISCIVVRF 282          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C30_ARATH (Probable protein phosphatase 2C 30 OS=Arabidopsis thaliana GN=PP2C5 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.935e-15
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 2
Query:    8 RGVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALAR---TGEEPEI---AARKLTETAFTRGSADNITCIVVRFHH 283
            +G LA+SR  G+R LK++V+AEPE   L +   FE L+LASDGLWD V N++AV + R    G E  +   A +KL E +  RGS D+I+ I+++  +
Sbjct:  290 QGTLAVSRGIGDRYLKEWVIAEPETRTLRIKPEFEFLILASDGLWDKVTNQEAVDVVRPYCVGVENPMTLSACKKLAELSVKRGSLDDISLIIIQLQN 387          
The following BLAST results are available for this feature:
BLAST of CX294045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
P2C45_ORYSJ2.809e-2458.24Probable protein phosphatase 2C 45 OS=Oryza sativa... [more]
P2C10_ORYSJ3.106e-2358.43Probable protein phosphatase 2C 10 OS=Oryza sativa... [more]
P2C11_ARATH5.857e-2256.18Probable protein phosphatase 2C 11 OS=Arabidopsis ... [more]
P2C44_ORYSJ7.409e-1743.82Probable protein phosphatase 2C 44 OS=Oryza sativa... [more]
P2C41_ORYSJ7.409e-1749.44Probable protein phosphatase 2C 41 OS=Oryza sativa... [more]
P2C09_ARATH1.651e-1647.19Probable protein phosphatase 2C 9 OS=Arabidopsis t... [more]
P2C10_ARATH6.272e-1646.59Probable protein phosphatase 2C 10 OS=Arabidopsis ... [more]
P2C62_ORYSJ2.384e-1544.94Probable protein phosphatase 2C 62 OS=Oryza sativa... [more]
P2C17_ARATH3.113e-1544.94Probable protein phosphatase 2C 17 OS=Arabidopsis ... [more]
P2C30_ARATH6.935e-1543.88Probable protein phosphatase 2C 30 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05005C08SK FlavRip1 Citrus clementina cDNA clone C05005C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294045 ID=CX294045; Name=CX294045; organism=Citrus clementina; type=EST; length=523bp
CTCGTGCCGAGGTGTGCTAGCTATGTCTCGTGCTTTTGGTAACCGCATGC
TGAAGCAATTTGTCGTTGCGGAACCTGAGATCCATGACCTTGAAGTATAT
GAAGGATTTGAGCTGCTTGTGCTTGCAAGTGATGGACTATGGGATGTAGT
ACCCAATGAGGATGCTGTTGCACTTGCCCGAACAGGGGAAGAACCTGAAA
TCGCAGCTCGGAAGTTAACGGAGACTGCTTTTACCCGAGGCAGTGCTGAC
AACATAACGTGCATTGTAGTGAGATTCCACCACGTCAATGAATATCCAGC
CGAACCTGAAGTGGAGCAGGAGTAGGAATCTTCATTTATGTTGCATGGTG
TAGGTTTATCGACCCTTTAGGCTGTAGATCATCTGGAAATCTGCACATGC
ATGGCTGAATGTGCATAGCACCAGGGAGGAAGGCGATTTTTTTATTCATT
GTTTCTTTTTTTTCCCCGCACCCCCCTAATTTGAACCTTTCTGTATTGAC
TGCATATATTGAGTCTTGGTTCA
back to top