CX294045

Overview
NameCX294045
Unique NameCX294045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C58_ARATH (Probable protein phosphatase 2C 58 OS=Arabidopsis thaliana GN=At4g28400 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.057e-15
Identity = 38/90 (42.22%), Postives = 62/90 (68.89%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFH 280
            G LA++RAFG++ LK  + +EP+I    + +  E ++ ASDG+W V+ N++AV   ++ ++P  AA+ L E A +R S D+I+CIVV+FH
Sbjct:  194 GQLAVARAFGDKSLKLHLSSEPDITHQTIDDHTEFILFASDGIWKVLSNQEAVDAIKSIKDPHAAAKHLIEEAISRKSKDDISCIVVKFH 283          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C02_ARATH (Probable protein phosphatase 2C 2 OS=Arabidopsis thaliana GN=At1g07160 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.183e-14
Identity = 40/100 (40.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:    8 RGVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALAR-------TGEEPEIAARKLTETAFTRGSADNITCIVVRFHHV 286
            +G LA+SR  G+  LKQ++++EPEI+ L +    E L+LASDGLWD V N++AV +AR          +P +A +KL + + +RGS D+I+ ++++  H+
Sbjct:  280 QGSLAVSRGIGDAHLKQWIISEPEINILRINPQHEFLILASDGLWDKVSNQEAVDIARPFCKGTDQKRKPLLACKKLVDLSVSRGSLDDISVMLIQLCHL 379          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C51_ORYSJ (Probable protein phosphatase 2C 51 OS=Oryza sativa subsp. japonica GN=Os05g0572700 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.668e-14
Identity = 48/112 (42.86%), Postives = 60/112 (53.57%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALAR---------------TGEEPEIAARKLTETAFTRGSADNITCIVVRFHHVNEYPA 301
            GVLA SR+ G+  LK FV AEPE+  +E  +  E L+LASDGLWDVV NE A  +AR               +G     AA  L E A +RGS DNI+ +VV    +    A
Sbjct:  270 GVLATSRSIGDYYLKPFVSAEPEVRVVERTDKDEFLILASDGLWDVVSNEVACKIARNCLNGRAASMFPESVSGSSAADAAALLAELAVSRGSRDNISVVVVELRRLKSRAA 381          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C32_ORYSJ (Probable protein phosphatase 2C 32 OS=Oryza sativa subsp. japonica GN=Os03g0292100 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.308e-13
Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = 2
Query:    8 RGVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALAR------TGEEPEIAARKLTETAFTRGSADNITCIVVR 274
            +G LA+SR  G+  LKQ+VV++P+   L V    E L+LASDGLWD V N++AV +AR             A R+L ETA TRGS D+I+ ++++
Sbjct:  291 QGSLAVSRGIGDAHLKQWVVSDPDTTTLGVDSQCEFLILASDGLWDKVENQEAVDIARPLYISNDKASRMTACRRLVETAVTRGSTDDISIVIIQ 385          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C20_ARATH (Probable protein phosphatase 2C 20 OS=Arabidopsis thaliana GN=PPC3-1.2 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.708e-13
Identity = 36/89 (40.45%), Postives = 62/89 (69.66%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 277
            G LA++RAFG++ LK  + ++P+I D  +    E ++ ASDG+W V+ N++AV L ++ ++P+ AA++L E A ++ S D+I+CIV  F
Sbjct:  190 GQLAVARAFGDKSLKIHLSSDPDIRDENIDHETEFILFASDGVWKVMSNQEAVDLIKSIKDPQAAAKELIEEAVSKQSTDDISCIVPCF 278          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: PP2C1_SCHPO (Protein phosphatase 2C homolog 1 OS=Schizosaccharomyces pombe GN=ptc1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.231e-13
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGF-ELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVV 271
            GVLA++RA G+  LK+ V A P   +  ++ G  E  ++A DGLWDVV +++AV   R    P  AA +L E A  R S DNITCIVV
Sbjct:  234 GVLAVTRALGDTYLKELVSAHPFTTETRIWNGHDEFFIIACDGLWDVVSDQEAVDFVRNFVSPREAAVRLVEFALKRLSTDNITCIVV 321          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C37_ARATH (Protein phosphatase 2C 37 OS=Arabidopsis thaliana GN=PP2CA PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.231e-13
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALAR-------TGEEPEI-------AARKLTETAFTRGSADNITCIVV 271
            GVLAMSRA G+  LK +V+ +PE+   +  +  E L+LASDGLWDVVPNE A  +AR        G++ +        AA  LT+ A  R S+DN++ +VV
Sbjct:  287 GVLAMSRAIGDNYLKPYVIPDPEVTVTDRTDEDECLILASDGLWDVVPNETACGVARMCLRGAGAGDDSDAAHNACSDAALLLTKLALARQSSDNVSVVVV 387          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C08_ORYSJ (Probable protein phosphatase 2C 8 OS=Oryza sativa subsp. japonica GN=Os01g0656200 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.805e-13
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALAR---------------TGEEPEIAARKLTETAFTRGSADNITCIVVRFHHV 286
            GVLA SR+ G+  LK +V+AEPE+  ++  +  E L+LASDGLWDVV N+ A  +AR               +G     AA  L E A +RGS DNI+ +VV    +
Sbjct:  285 GVLATSRSIGDYYLKPYVIAEPEVTVMDRTDKDEFLILASDGLWDVVSNDVACKIARNCLSGRAASKYPESVSGSTAADAAALLVELAISRGSKDNISVVVVELRRL 391          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C28_ARATH (Probable protein phosphatase 2C 28 OS=Arabidopsis thaliana GN=At2g34740 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.107e-12
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 277
            G LAM+RAFG+  LK+ +   P I   E+++  + L+LASDGLW V+ N++     +     E AA+ L + A  RGS D+I+C+VV F
Sbjct:  146 GQLAMTRAFGDGGLKEHISVIPNIEIAEIHDDTKFLILASDGLWKVMSNDEVWDQIKKRGNAEEAAKMLIDKALARGSKDDISCVVVSF 234          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C31_ARATH (Protein kinase and PP2C-like domain-containing protein OS=Arabidopsis thaliana GN=At2g40860/At2g40870 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.889e-12
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 2
Query:   17 LAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALAR-TGEEPEIAARKLTETAFTRGSADNITCIVV 271
            L ++R+ G+  LK  V AEPEI +  +    E LV+ASDGLWDV+ +E+ + + R T +EP + +++L   A  RGS DNIT IVV
Sbjct:  561 LQVTRSIGDDDLKPAVTAEPEISETILSADDEFLVMASDGLWDVMNDEEVIGIIRDTVKEPSMCSKRLATEAAARGSGDNITVIVV 646          
The following BLAST results are available for this feature:
BLAST of CX294045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
P2C58_ARATH9.057e-1542.22Probable protein phosphatase 2C 58 OS=Arabidopsis ... [more]
P2C02_ARATH1.183e-1440.00Probable protein phosphatase 2C 2 OS=Arabidopsis t... [more]
P2C51_ORYSJ7.668e-1442.86Probable protein phosphatase 2C 51 OS=Oryza sativa... [more]
P2C32_ORYSJ1.308e-1344.21Probable protein phosphatase 2C 32 OS=Oryza sativa... [more]
P2C20_ARATH1.708e-1340.45Probable protein phosphatase 2C 20 OS=Arabidopsis ... [more]
PP2C1_SCHPO2.231e-1346.59Protein phosphatase 2C homolog 1 OS=Schizosaccharo... [more]
P2C37_ARATH2.231e-1343.56Protein phosphatase 2C 37 OS=Arabidopsis thaliana ... [more]
P2C08_ORYSJ3.805e-1341.12Probable protein phosphatase 2C 8 OS=Oryza sativa ... [more]
P2C28_ARATH1.107e-1241.57Probable protein phosphatase 2C 28 OS=Arabidopsis ... [more]
P2C31_ARATH1.889e-1245.35Protein kinase and PP2C-like domain-containing pro... [more]

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Properties
Property NameValue
Genbank descriptionC05005C08SK FlavRip1 Citrus clementina cDNA clone C05005C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294045 ID=CX294045; Name=CX294045; organism=Citrus clementina; type=EST; length=523bp
CTCGTGCCGAGGTGTGCTAGCTATGTCTCGTGCTTTTGGTAACCGCATGC
TGAAGCAATTTGTCGTTGCGGAACCTGAGATCCATGACCTTGAAGTATAT
GAAGGATTTGAGCTGCTTGTGCTTGCAAGTGATGGACTATGGGATGTAGT
ACCCAATGAGGATGCTGTTGCACTTGCCCGAACAGGGGAAGAACCTGAAA
TCGCAGCTCGGAAGTTAACGGAGACTGCTTTTACCCGAGGCAGTGCTGAC
AACATAACGTGCATTGTAGTGAGATTCCACCACGTCAATGAATATCCAGC
CGAACCTGAAGTGGAGCAGGAGTAGGAATCTTCATTTATGTTGCATGGTG
TAGGTTTATCGACCCTTTAGGCTGTAGATCATCTGGAAATCTGCACATGC
ATGGCTGAATGTGCATAGCACCAGGGAGGAAGGCGATTTTTTTATTCATT
GTTTCTTTTTTTTCCCCGCACCCCCCTAATTTGAACCTTTCTGTATTGAC
TGCATATATTGAGTCTTGGTTCA
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