CX294045

Overview
NameCX294045
Unique NameCX294045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10268 contig Ccv1_Contig10268:488..1010. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C25_ARATH (Probable protein phosphatase 2C 25 OS=Arabidopsis thaliana GN=At2g30020 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.467e-12
Identity = 39/94 (41.49%), Postives = 61/94 (64.89%), Query Frame = 2
Query:    8 RGVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALAR---TGEEPEI---AARKLTETAFTRGSADNITCIVV 271
            +G LA+SR  G+  LK++V+AEPE     +    E L+LASDGLWD V N++AV +AR    G E  +   A +KL + + +RGS+D+I+ +++
Sbjct:  297 QGSLAVSRGIGDAQLKKWVIAEPETKISRIEHDHEFLILASDGLWDKVSNQEAVDIARPLCLGTEKPLLLAACKKLVDLSASRGSSDDISVMLI 390          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C04_ORYSJ (Protein kinase and PP2C-like domain-containing protein OS=Oryza sativa subsp. japonica GN=Os01g0541900 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.207e-12
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 2
Query:   17 LAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALAR-TGEEPEIAARKLTETAFTRGSADNITCIVV 271
            L ++R+ G+  LK  V A+PE+ +  +    E LV+ASDGLWDV+ NED +++ + T +EP + +++L   A  RGS DNIT IVV
Sbjct:  560 LQVTRSIGDDDLKPAVTAQPEVIETILSPDDEFLVMASDGLWDVMSNEDVLSIIKDTVKEPGMCSKRLATEAAARGSKDNITVIVV 645          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C50_ORYSJ (Probable protein phosphatase 2C 50 OS=Oryza sativa subsp. japonica GN=Os05g0537400 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.495e-12
Identity = 44/110 (40.00%), Postives = 58/110 (52.73%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALAR-----------------------TGEEPEIAARKLTETAFTRGSADNITCIVV 271
            G+LAMSR+ G+R LK FV+ +PE+  +   +  + L+LASDGLWDVV NE+A  +AR                       T    + AA  L   A  +GS DNIT IVV
Sbjct:  266 GILAMSRSIGDRYLKPFVIPKPEVMVVPRAKDDDCLILASDGLWDVVSNEEACKVARRQILLWHKNNGAASPLSDEGEGSTDPAAQAAADYLMRLALKKGSEDNITVIVV 375          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C39_ARATH (Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.373e-12
Identity = 36/89 (40.45%), Postives = 59/89 (66.29%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 277
            G LA++RAFG++ LK  + +EP +    + +  E L+LASDGLW V+ N++AV   +  ++ + AA+ L E A  R S+D+I+ +VV+F
Sbjct:  200 GQLAVARAFGDKSLKMHLSSEPYVTVEIIDDDAEFLILASDGLWKVMSNQEAVDSIKGIKDAKAAAKHLAEEAVARKSSDDISVVVVKF 288          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C74_ORYSJ (Probable protein phosphatase 2C 74 OS=Oryza sativa subsp. japonica GN=Os11g0242200 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.088e-11
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 2
Query:   17 LAMSRAFGNRMLKQFVVAEPEIHDLEVY-EGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVV 271
            LA++R+FG+  LK++VVAEPE+    +   G E LV+ASDGLW+ V N++AV     G     + R+L + A  RGS D++T +VV
Sbjct:  304 LAVTRSFGDGGLKRWVVAEPEVSRTPLAGAGCEFLVIASDGLWNKVSNQEAVDAVAAGHYSVDSCRRLVDMARRRGSRDDVTVMVV 389          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: PPM1L_MOUSE (Protein phosphatase 1L OS=Mus musculus GN=Ppm1l PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.727e-11
Identity = 40/97 (41.24%), Postives = 60/97 (61.86%), Query Frame = 2
Query:    8 RGVLAMSRAFGNRMLKQF--VVAEPEI--HDLEVYEGFELLVLASDGLWDVVPNEDAVALARTG-EEPEIAARKLTETAFTRGSADNITCIVVRFHH 283
            +G+LAMSR+ G+  LK    V+ +P+I   DL+  +  E ++LASDGLWD   NE+AV   +   +EP   A+ +   +F RG  DNIT +VV+F +
Sbjct:  258 QGILAMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQP-EFMILASDGLWDAFSNEEAVRFIKERLDEPHFGAKSIVLQSFYRGCPDNITVMVVKFRN 353          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: PPM1L_HUMAN (Protein phosphatase 1L OS=Homo sapiens GN=PPM1L PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.727e-11
Identity = 40/97 (41.24%), Postives = 60/97 (61.86%), Query Frame = 2
Query:    8 RGVLAMSRAFGNRMLKQF--VVAEPEI--HDLEVYEGFELLVLASDGLWDVVPNEDAVALARTG-EEPEIAARKLTETAFTRGSADNITCIVVRFHH 283
            +G+LAMSR+ G+  LK    V+ +P+I   DL+  +  E ++LASDGLWD   NE+AV   +   +EP   A+ +   +F RG  DNIT +VV+F +
Sbjct:  258 QGILAMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQP-EFMILASDGLWDAFSNEEAVRFIKERLDEPHFGAKSIVLQSFYRGCPDNITVMVVKFRN 353          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: PPM1L_BOVIN (Protein phosphatase 1L OS=Bos taurus GN=PPM1L PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.727e-11
Identity = 40/97 (41.24%), Postives = 60/97 (61.86%), Query Frame = 2
Query:    8 RGVLAMSRAFGNRMLKQF--VVAEPEI--HDLEVYEGFELLVLASDGLWDVVPNEDAVALARTG-EEPEIAARKLTETAFTRGSADNITCIVVRFHH 283
            +G+LAMSR+ G+  LK    V+ +P+I   DL+  +  E ++LASDGLWD   NE+AV   +   +EP   A+ +   +F RG  DNIT +VV+F +
Sbjct:  258 QGILAMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQP-EFMILASDGLWDAFSNEEAVRFIKDRLDEPHFGAKSIVLQSFYRGCPDNITVMVVKFRN 353          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C77_ARATH (Protein phosphatase 2C 77 OS=Arabidopsis thaliana GN=ABI2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.562e-11
Identity = 42/124 (33.87%), Postives = 65/124 (52.42%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALAR------------------------TGEEPEI--AARKLTETAFTRGSADNITCIVVRFHHVNEYPAE 304
            GVLAMSR+ G+R LK  V+ +PE+  +   +  + L+LASDGLWDV+ NE+   LAR                         G++P    AA  L++ A  +GS DNI+ +VV    + ++ ++
Sbjct:  297 GVLAMSRSIGDRYLKPSVIPDPEVTSVRRVKEDDCLILASDGLWDVMTNEEVCDLARKRILLWHKKNAMAGEALLPAEKRGEGKDPAAMSAAEYLSKMALQKGSKDNISVVVVDLKGIRKFKSK 420          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C68_ORYSJ (Probable protein phosphatase 2C 68 OS=Oryza sativa subsp. japonica GN=Os09g0325700 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.562e-11
Identity = 45/99 (45.45%), Postives = 57/99 (57.58%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALA----RTGEEP--EIAARKLTETAFTRGSADNITCIVVRFHHVN 289
            GVLAMSR+ G+  LK +V A PE+      +  E L+LASDGLWDVV NE A  +A    R G +     AA  LT+ A  R S+DNI+ +VV     N
Sbjct:  258 GVLAMSRSIGDAYLKPYVTAVPEVTVTGRSDFDECLILASDGLWDVVSNEAACEVAQSCLRRGRQRWCAEAAAVLTKLALARRSSDNISVVVVDLRRGN 356          
The following BLAST results are available for this feature:
BLAST of CX294045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
P2C25_ARATH2.467e-1241.49Probable protein phosphatase 2C 25 OS=Arabidopsis ... [more]
P2C04_ORYSJ4.207e-1244.19Protein kinase and PP2C-like domain-containing pro... [more]
P2C50_ORYSJ5.495e-1240.00Probable protein phosphatase 2C 50 OS=Oryza sativa... [more]
P2C39_ARATH9.373e-1240.45Probable protein phosphatase 2C 39 OS=Arabidopsis ... [more]
P2C74_ORYSJ2.088e-1144.19Probable protein phosphatase 2C 74 OS=Oryza sativa... [more]
PPM1L_MOUSE2.727e-1141.24Protein phosphatase 1L OS=Mus musculus GN=Ppm1l PE... [more]
PPM1L_HUMAN2.727e-1141.24Protein phosphatase 1L OS=Homo sapiens GN=PPM1L PE... [more]
PPM1L_BOVIN2.727e-1141.24Protein phosphatase 1L OS=Bos taurus GN=PPM1L PE=2... [more]
P2C77_ARATH3.562e-1133.87Protein phosphatase 2C 77 OS=Arabidopsis thaliana ... [more]
P2C68_ORYSJ3.562e-1145.45Probable protein phosphatase 2C 68 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC05005C08SK FlavRip1 Citrus clementina cDNA clone C05005C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294045 ID=CX294045; Name=CX294045; organism=Citrus clementina; type=EST; length=523bp
CTCGTGCCGAGGTGTGCTAGCTATGTCTCGTGCTTTTGGTAACCGCATGC
TGAAGCAATTTGTCGTTGCGGAACCTGAGATCCATGACCTTGAAGTATAT
GAAGGATTTGAGCTGCTTGTGCTTGCAAGTGATGGACTATGGGATGTAGT
ACCCAATGAGGATGCTGTTGCACTTGCCCGAACAGGGGAAGAACCTGAAA
TCGCAGCTCGGAAGTTAACGGAGACTGCTTTTACCCGAGGCAGTGCTGAC
AACATAACGTGCATTGTAGTGAGATTCCACCACGTCAATGAATATCCAGC
CGAACCTGAAGTGGAGCAGGAGTAGGAATCTTCATTTATGTTGCATGGTG
TAGGTTTATCGACCCTTTAGGCTGTAGATCATCTGGAAATCTGCACATGC
ATGGCTGAATGTGCATAGCACCAGGGAGGAAGGCGATTTTTTTATTCATT
GTTTCTTTTTTTTCCCCGCACCCCCCTAATTTGAACCTTTCTGTATTGAC
TGCATATATTGAGTCTTGGTTCA
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