CX294045

Overview
NameCX294045
Unique NameCX294045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10268 contig Ccv1_Contig10268:488..1010. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C24_ARATH (Probable protein phosphatase 2C 24 OS=Arabidopsis thaliana GN=At2g29380 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.562e-11
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALAR----------TGEEPEI-------AARKLTETAFTRGSADNITCIVV 271
            GVLAMSRA G+  LK +V  EPE+   +  +  + L+LASDGLWDVV NE A ++AR            E+P I       A+  LT+ A  R S+DN++ +V+
Sbjct:  256 GVLAMSRAIGDNYLKPYVSCEPEVTITDRRDD-DCLILASDGLWDVVSNETACSVARMCLRGGGRRQDNEDPAISDKACTEASVLLTKLALARNSSDNVSVVVI 358          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: PP2C1_YEAST (Protein phosphatase 2C homolog 1 OS=Saccharomyces cerevisiae GN=PTC1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.652e-11
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVV 271
            G+LA++R+ G++     VV  P    +E+    + L+LA DGLWDV+ ++DA  L +   EP  AA+ L   A   G+ DN+T +VV
Sbjct:  193 GMLAVTRSLGDKFFDSLVVGSPFTTSVEITSEDKFLILACDGLWDVIDDQDACELIKDITEPNEAAKVLVRYALENGTTDNVTVMVV 279          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C06_ORYSJ (Probable protein phosphatase 2C 6 OS=Oryza sativa subsp. japonica GN=Os01g0583100 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.652e-11
Identity = 45/110 (40.91%), Postives = 59/110 (53.64%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALAR---------TGEEP--------------EIAARKLTETAFTRGSADNITCIVV 271
            GVLAMSR+ G+R LK +++  PEI  +   +  E LVLASDGLWDV+ NE+   +AR          G  P              E AA  L++ A  +GS DNI+ IVV
Sbjct:  346 GVLAMSRSIGDRYLKPWIIPVPEITIVPRAKDDECLVLASDGLWDVMSNEEVCDVARKRILLWHKKNGTNPASAPRSGDSSDPAAEAAAECLSKLALQKGSKDNISVIVV 455          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C16_ARATH (Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = 2
Query:   11 GVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAVALAR---------TGEEP------------EIAARKLTETAFTRGSADNITCIVV 271
            GVLAMSR+ G+R LK +V+ EPE+  +      E L+LASDGLWDV+ N++   +AR          G  P            + AA  L+  A  +GS DNI+ IV+
Sbjct:  392 GVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVI 499          
BLAST of CX294045 vs. ExPASy Swiss-Prot
Match: P2C14_ARATH (Probable protein phosphatase 2C 14 OS=Arabidopsis thaliana GN=At1g67820 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 2
Query:    8 RGVLAMSRAFGNRMLKQFVVAEPEIHDLEVYEGFELLVLASDGLWDVVPNEDAV 169
            +G+LA+SR+ G+  LK++VVAEPE   LE+ +  E LVLASDGLWDVV N++AV
Sbjct:  277 QGILAVSRSIGDAHLKKWVVAEPETRVLELEQDMEFLVLASDGLWDVVSNQEAV 330          
The following BLAST results are available for this feature:
BLAST of CX294045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
P2C24_ARATH3.562e-1141.35Probable protein phosphatase 2C 24 OS=Arabidopsis ... [more]
PP2C1_YEAST4.652e-1137.93Protein phosphatase 2C homolog 1 OS=Saccharomyces ... [more]
P2C06_ORYSJ4.652e-1140.91Probable protein phosphatase 2C 6 OS=Oryza sativa ... [more]
P2C16_ARATH7.935e-1138.89Protein phosphatase 2C 16 OS=Arabidopsis thaliana ... [more]
P2C14_ARATH7.935e-1159.26Probable protein phosphatase 2C 14 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC05005C08SK FlavRip1 Citrus clementina cDNA clone C05005C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294045 ID=CX294045; Name=CX294045; organism=Citrus clementina; type=EST; length=523bp
CTCGTGCCGAGGTGTGCTAGCTATGTCTCGTGCTTTTGGTAACCGCATGC
TGAAGCAATTTGTCGTTGCGGAACCTGAGATCCATGACCTTGAAGTATAT
GAAGGATTTGAGCTGCTTGTGCTTGCAAGTGATGGACTATGGGATGTAGT
ACCCAATGAGGATGCTGTTGCACTTGCCCGAACAGGGGAAGAACCTGAAA
TCGCAGCTCGGAAGTTAACGGAGACTGCTTTTACCCGAGGCAGTGCTGAC
AACATAACGTGCATTGTAGTGAGATTCCACCACGTCAATGAATATCCAGC
CGAACCTGAAGTGGAGCAGGAGTAGGAATCTTCATTTATGTTGCATGGTG
TAGGTTTATCGACCCTTTAGGCTGTAGATCATCTGGAAATCTGCACATGC
ATGGCTGAATGTGCATAGCACCAGGGAGGAAGGCGATTTTTTTATTCATT
GTTTCTTTTTTTTCCCCGCACCCCCCTAATTTGAACCTTTCTGTATTGAC
TGCATATATTGAGTCTTGGTTCA
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