CX294046

Overview
NameCX294046
Unique NameCX294046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig534 contig Ccv1_Contig534:1..561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_MUSDO (Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.888e-20
Identity = 39/75 (52.00%), Postives = 57/75 (76.00%), Query Frame = 3
Query:  123 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGEL 347
            K +T  E A +NTKD  W ++HN VYDVT++L++HPGG++V++    KDAT+ FED GHS DARE+++ + +GEL
Sbjct:    7 KYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGEL 81          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5B_PONAB (Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.168e-19
Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 3
Query:  129 YTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQPSDFALKLKNLT-KEYWAAPVAVVGISVMVGFL 494
            Y M+E A  N+  + W+V+H +VYDVT +L++HPGG++V+L     DA++ FED GHS DARE+L+ + IG++  S  L PE   +  + PS      KN T K  WA  +  +  +V++GFL
Sbjct:   23 YRMEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPSD-LKPE---NGSKDPS------KNDTCKSCWAYWILPIIGAVLLGFL 135          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5B_HUMAN (Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.168e-19
Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 3
Query:  129 YTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQPSDFALKLKNLT-KEYWAAPVAVVGISVMVGFL 494
            Y ++E A  N+  + W+V+H +VYDVT +L++HPGG++V+L     DA++ FED GHS DARE+L+ + IG++  S  L PE   S  + PS      KN T K  WA  +  +  +V++GFL
Sbjct:   23 YRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPSD-LKPE---SGSKDPS------KNDTCKSCWAYWILPIIGAVLLGFL 135          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5B_RAT (Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.404e-19
Identity = 45/122 (36.89%), Postives = 74/122 (60.66%), Query Frame = 3
Query:  129 YTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQPSDFALKLKNLTKEYWAAPVAVVGISVMVGFL 494
            Y ++E A  NT ++ W+V+H +VYD+T +L +HPGG++V+L     DAT+ FED GHS DARE+L+ + IG++  +  L P+      + PS       N  +  WA  +  +  ++++GFL
Sbjct:   23 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPND-LKPK---DGDKDPSK-----NNSCQSSWAYWIVPIVGAILIGFL 135          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_NEUCR (Probable cytochrome b5 OS=Neurospora crassa GN=B23L21.190 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 7.058e-19
Identity = 38/77 (49.35%), Postives = 57/77 (74.03%), Query Frame = 3
Query:  117 LSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGEL 347
            +S  +T Q+ A HNTK D ++V+H+KVYD+T ++D+HPGG++V+L    +D+T+ FED GHS +ARE LE   +G L
Sbjct:    1 MSAEFTYQDVAEHNTKKDLYVVIHDKVYDITKFVDEHPGGEEVLLDVAGQDSTEAFEDVGHSDEAREALEPLLVGTL 77          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_HORSE (Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.204e-18
Identity = 39/75 (52.00%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  123 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGEL 347
            K YT++E   HN     W+++H+KVYD+T +L+DHPGG++V+      DAT+ FED GHS DAREL ++F IGEL
Sbjct:   10 KYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEDHPGGEEVLREQAGGDATENFEDIGHSTDARELSKTFIIGEL 84          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_PIG (Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 1.572e-18
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  123 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGEL 347
            K YT++E   HN     W+++H+KVYD+T +L++HPGG++V+      DAT+ FED GHS DAREL ++F IGEL
Sbjct:   10 KYYTLEEIQKHNNSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGEL 84          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_RABIT (Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 92.0485 bits (227), Expect = 2.054e-18
Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = 3
Query:  123 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGEL--DTSSPLIPELE 380
            K YT++E   HN     W+++H+KVYD+T +L++HPGG++V+      DAT+ FED GHS DAREL ++F IGEL  D  S L   +E
Sbjct:   10 KYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDDRSKLSKPME 97          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_CANTR (Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.054e-18
Identity = 36/78 (46.15%), Postives = 56/78 (71.79%), Query Frame = 3
Query:  114 TLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGEL 347
            T + +YT +E A H T DD W++++ KVY++++Y+D+HPGG++V+L     DAT+ F+D GHS +A E+LE   IG L
Sbjct:    6 TTTTIYTHEEVAQHTTHDDLWVILNGKVYNISNYIDEHPGGEEVILDCAGTDATEAFDDIGHSDEAHEILEKLYIGNL 83          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5B_MOUSE (Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.054e-18
Identity = 45/122 (36.89%), Postives = 73/122 (59.84%), Query Frame = 3
Query:  129 YTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQPSDFALKLKNLTKEYWAAPVAVVGISVMVGFL 494
            Y ++E A  N+ ++ W+V+H +VYD+T +L +HPGG++V+L     DAT+ FED GHS DARE+L+ + IG++  S  L P+      + PS       N  +  WA     +  ++++GFL
Sbjct:   23 YRLEEVAKRNSAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPSD-LKPK---GDDKDPSK-----NNSCQSSWAYWFVPIVGAILIGFL 135          
The following BLAST results are available for this feature:
BLAST of CX294046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CYB5_MUSDO4.888e-2052.00Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV... [more]
CYB5B_PONAB3.168e-1941.46Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2... [more]
CYB5B_HUMAN3.168e-1941.46Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1... [more]
CYB5B_RAT5.404e-1936.89Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b... [more]
CYB5_NEUCR7.058e-1949.35Probable cytochrome b5 OS=Neurospora crassa GN=B23... [more]
CYB5_HORSE1.204e-1852.00Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3[more]
CYB5_PIG1.572e-1850.67Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3[more]
CYB5_RABIT2.054e-1847.73Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE... [more]
CYB5_CANTR2.054e-1846.15Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 ... [more]
CYB5B_MOUSE2.054e-1836.89Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC05005C09SK FlavRip1 Citrus clementina cDNA clone C05005C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294046 ID=CX294046; Name=CX294046; organism=Citrus clementina; type=EST; length=561bp
CCTGAGATGCCAAATCCCAATTCTTGAGCACAGGGTTGAAGGTGAGGATC
TCAGAAAAGCTTGTTGAGAGAGAGGGAGAGCGGCTGACCAAAAGCCCACC
AATAAAGATGCCGACTCTCTCAAAGCTCTACACGATGCAAGAAGCTGCTC
ACCACAACACCAAAGACGATTGCTGGATTGTCGTTCATAACAAGGTGTAT
GATGTCACTTCATATTTGGATGATCATCCTGGTGGAGATGATGTAGTTCT
TGCTGCAACGGCAAAAGATGCAACAGACGAATTTGAAGATGCTGGGCATA
GCAAAGATGCAAGGGAACTCCTGGAGAGCTTTTGTATCGGTGAGCTTGAC
ACTTCATCTCCATTGATCCCAGAACTTGAAATTTCGTCTAAAAGGCAACC
GTCAGATTTTGCACTAAAGCTCAAGAACTTGACAAAGGAATACTGGGCTG
CTCCTGTTGCTGTTGTTGGCATCTCCGTGATGGTTGGCTTCTTGTGCTTG
CGCAAGAAGTGAACCAACGCATCTCCATTAACTGTCTAGTATGCTGCATG
AATTTTGGATT
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