CX294046

Overview
NameCX294046
Unique NameCX294046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig534 contig Ccv1_Contig534:1..561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA_SPIOL (Nitrate reductase [NADH] OS=Spinacia oleracea GN=NIA PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.682e-18
Identity = 51/99 (51.52%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   87 TKSPPIKMPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGEL-------DTSSP 362
            T S P  M T SK+Y+M E   HNT D  WIVVH  VY+ T +L DHPGG D +L     D T+EF DA HS  A+ LLE F IGEL       D+SSP
Sbjct:  541 TASTPF-MNTTSKMYSMSEVKKHNTADSAWIVVHGNVYNATRFLKDHPGGSDSILINAGTDCTEEF-DAIHSDKAKRLLEDFRIGELISTGYTSDSSSP 637          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_CHICK (Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 91.6633 bits (226), Expect = 2.682e-18
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  123 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGEL 347
            + Y ++E   HN     WI+VH+++YD+T +LD+HPGG++V+      DAT+ FED GHS DAR L E+F IGEL
Sbjct:   15 RYYRLEEVQKHNNSQSTWIIVHHRIYDITKFLDEHPGGEEVLREQAGGDATENFEDVGHSTDARALSETFIIGEL 89          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_BOVIN (Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 3.503e-18
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 3
Query:  123 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGEL 347
            K YT++E   HN     W+++H KVYD+T +L++HPGG++V+      DAT+ FED GHS DAREL ++F IGEL
Sbjct:   10 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGEL 84          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_ALOSE (Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=CYB5A PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.503e-18
Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = 3
Query:  123 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGEL 347
            K YT++E   HN     W+++H+KVYD+T +L++HPGG++V+      DAT++FED GHS DAREL +++ IGEL
Sbjct:    6 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATEDFEDVGHSTDARELSKTYIIGEL 80          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB52_SCHPO (Probable cytochrome b5 2 OS=Schizosaccharomyces pombe GN=SPCC16A11.10c PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.503e-18
Identity = 40/75 (53.33%), Postives = 56/75 (74.67%), Query Frame = 3
Query:  123 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGEL 347
            K  T++E   HNT+DD +IVV +KVYD++ +LD HPGG++V++    +DA+  FED GHS+DA+ELLE F IG L
Sbjct:    4 KTITVEEVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHSEDAQELLEKFYIGNL 78          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_MORAP (Cytochrome b5 OS=Mortierella alpina PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.575e-18
Identity = 36/93 (38.71%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  123 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQP 401
            K +T+ + + H TKD  ++ +H KVYD T ++D+HPGG++V++    +DAT+ FED GHS +AR+++    +GE  T S   P+ +  S   P
Sbjct:    5 KSFTLADLSQHTTKDSLYLAIHGKVYDCTGFIDEHPGGEEVLIDEAGRDATESFEDVGHSDEARDIMSKLLVGEFKTDSSEKPKAKSPSSSTP 97          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_HUMAN (Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 4.575e-18
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  123 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGEL 347
            K YT++E   HN     W+++H+KVYD+T +L++HPGG++V+      DAT+ FED GHS DARE+ ++F IGEL
Sbjct:   10 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGEL 84          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA_SOLLC (Nitrate reductase [NADH] OS=Solanum lycopersicum GN=NIA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.975e-18
Identity = 48/113 (42.48%), Postives = 63/113 (55.75%), Query Frame = 3
Query:  108 MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDT---SSPLIPELEISSKRQPSDFALKLKNLTK 437
            M T SK+Y+M E   HN+ D  WI+VH  +YD + +L DHPGG D +L     D T+EF DA HS  A++LLE F IGEL T   +S   P   +      S F   +K L +
Sbjct:  532 MNTASKMYSMSEVRKHNSSDSAWIIVHGHIYDASRFLKDHPGGVDSILINAGTDCTEEF-DAIHSDKAKKLLEDFRIGELITTGYTSDSSPNSSVHGSSSISSFLAPIKELVQ 643          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA_PETHY (Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.975e-18
Identity = 50/111 (45.05%), Postives = 62/111 (55.86%), Query Frame = 3
Query:  108 MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDT---SSPLIPELEISSKRQPSDFALKLKNL 431
            M T SK+Y+M E   HN+ D  WI+VH  VYD T +L DHPGG D +L     D T+EF DA HS  A++LLE F IGEL T   +S   P   +      S F   +K L
Sbjct:  531 MNTASKMYSMSEVKKHNSADSAWIIVHGHVYDATRFLKDHPGGIDSILINAGTDCTEEF-DAIHSDKAKKLLEDFRIGELITTGYTSDSSPNNSVHGSSSFSGFLAPIKEL 640          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA2_ARATH (Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana GN=NIA2 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.803e-18
Identity = 49/114 (42.98%), Postives = 65/114 (57.02%), Query Frame = 3
Query:   66 EREGERLTKSPPIK--------MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGEL-------DTSSP 362
            ER  E+   +PP          M T +K+Y+M E   HN+ D CWI+VH  +YD T +L DHPGG D +L     D T+EFE A HS  A+++LE + IGEL       D+SSP
Sbjct:  516 ERHLEKSADAPPSLKKSVSTPFMNTTAKMYSMSEVKKHNSADSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGTDCTEEFE-AIHSDKAKKMLEDYRIGELITTGYSSDSSSP 628          
The following BLAST results are available for this feature:
BLAST of CX294046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
NIA_SPIOL2.682e-1851.52Nitrate reductase [NADH] OS=Spinacia oleracea GN=N... [more]
CYB5_CHICK2.682e-1849.33Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4[more]
CYB5_BOVIN3.503e-1850.67Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3[more]
CYB5_ALOSE3.503e-1849.33Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=... [more]
CYB52_SCHPO3.503e-1853.33Probable cytochrome b5 2 OS=Schizosaccharomyces po... [more]
CYB5_MORAP4.575e-1838.71Cytochrome b5 OS=Mortierella alpina PE=1 SV=1[more]
CYB5_HUMAN4.575e-1849.33Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2[more]
NIA_SOLLC5.975e-1842.48Nitrate reductase [NADH] OS=Solanum lycopersicum G... [more]
NIA_PETHY5.975e-1845.05Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA... [more]
NIA2_ARATH7.803e-1842.98Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC05005C09SK FlavRip1 Citrus clementina cDNA clone C05005C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294046 ID=CX294046; Name=CX294046; organism=Citrus clementina; type=EST; length=561bp
CCTGAGATGCCAAATCCCAATTCTTGAGCACAGGGTTGAAGGTGAGGATC
TCAGAAAAGCTTGTTGAGAGAGAGGGAGAGCGGCTGACCAAAAGCCCACC
AATAAAGATGCCGACTCTCTCAAAGCTCTACACGATGCAAGAAGCTGCTC
ACCACAACACCAAAGACGATTGCTGGATTGTCGTTCATAACAAGGTGTAT
GATGTCACTTCATATTTGGATGATCATCCTGGTGGAGATGATGTAGTTCT
TGCTGCAACGGCAAAAGATGCAACAGACGAATTTGAAGATGCTGGGCATA
GCAAAGATGCAAGGGAACTCCTGGAGAGCTTTTGTATCGGTGAGCTTGAC
ACTTCATCTCCATTGATCCCAGAACTTGAAATTTCGTCTAAAAGGCAACC
GTCAGATTTTGCACTAAAGCTCAAGAACTTGACAAAGGAATACTGGGCTG
CTCCTGTTGCTGTTGTTGGCATCTCCGTGATGGTTGGCTTCTTGTGCTTG
CGCAAGAAGTGAACCAACGCATCTCCATTAACTGTCTAGTATGCTGCATG
AATTTTGGATT
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