CX294046

Overview
NameCX294046
Unique NameCX294046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_MOUSE (Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.803e-18
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 3
Query:  123 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQPSDFALKLKNLTKEYW 446
            K YT++E   H      W+++H+KVYD+T +L++HPGG++V+      DAT+ FED GHS DAREL +++ IGEL          + S   +PSD  +        +W
Sbjct:   10 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHPD-------DRSKIAKPSDTLITTVESNSSWW 110          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA2_SOYBN (Inducible nitrate reductase [NADH] 2 OS=Glycine max GN=INR2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.019e-17
Identity = 49/108 (45.37%), Postives = 62/108 (57.41%), Query Frame = 3
Query:   54 EKLVEREGERLTKSPPIK-------MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 356
            EK +E+  E    +P +K       M T SK YTM E   HN  D  WI+VH  VYD T +L DHPGG D +L     D T+EFE A HS  A+++LE + IGEL T+
Sbjct:  491 EKHLEKSSE---SNPTLKKSVSSPFMNTTSKTYTMSEVRRHNNADSAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFE-AIHSDKAKQMLEDYRIGELTTT 594          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_RAT (Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.019e-17
Identity = 46/127 (36.22%), Postives = 70/127 (55.12%), Query Frame = 3
Query:  123 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQPSDFALKLKNLTKEYWAAPVAVVGISVMVGFLCLR 503
            K YT++E   H      W+++H+KVYD+T +L++HPGG++V+      DAT+ FED GHS DAREL +++ IGEL          + S   +PS+  +        +W   V +  IS +V  L  R
Sbjct:   10 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHPD-------DRSKIAKPSETLITTVESNSSWWTNWV-IPAISALVVALMYR 128          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_YEAST (Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.738e-17
Identity = 37/96 (38.54%), Postives = 63/96 (65.62%), Query Frame = 3
Query:  117 LSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQPS 404
            + K+Y+ QE A HN  ++ WI++ +KVYDV+ + D+HPGGD++++    +DAT+ F D GHS +A  LL+   IG++D +S  +   ++S+    S
Sbjct:    1 MPKVYSYQEVAEHNGPENFWIIIDDKVYDVSQFKDEHPGGDEIIMDLGGQDATESFVDIGHSDEALRLLKGLYIGDVDKTSERVSVEKVSTSENQS 96          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA1_SOYBN (Inducible nitrate reductase [NADH] 1 OS=Glycine max GN=INR1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.270e-17
Identity = 49/108 (45.37%), Postives = 62/108 (57.41%), Query Frame = 3
Query:   54 EKLVEREGERLTKSPPIK-------MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 356
            EK +E+  E    +P +K       M T SK YTM E   HN  D  WI+VH  VYD T +L DHPGG D +L     D T+EFE A HS  A+++LE + IGEL T+
Sbjct:  487 EKHLEKSSE---SNPTLKKSVSSPFMNTTSKTYTMSEVRRHNNADSAWIIVHGHVYDWTRFLKDHPGGTDRILINAGTDCTEEFE-AIHSDKAKQMLEDYRIGELTTT 590          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA2_TOBAC (Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN=NIA2 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.873e-17
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 3
Query:  108 MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 356
            M T SK+Y+M E   H++ D  WI+VH  +YD T +L DHPGG D +L     D T+EF DA HS  A++LLE F IGEL T+
Sbjct:  527 MNTASKMYSMSEVRKHSSADSAWIIVHGHIYDATRFLKDHPGGTDSILINAGTDCTEEF-DAIHSDKAKKLLEDFRIGELITT 608          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA1_TOBAC (Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN=NIA1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.873e-17
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 3
Query:  108 MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 356
            M T SK+Y+M E   H++ D  WI+VH  +YD T +L DHPGG D +L     D T+EF DA HS  A++LLE F IGEL T+
Sbjct:  527 MNTASKMYSMSEVRKHSSADSAWIIVHGHIYDATRFLKDHPGGSDSILINAGTDCTEEF-DAIHSDKAKKLLEEFRIGELLTT 608          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA1_ARATH (Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana GN=NIA1 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 3.873e-17
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 3
Query:  108 MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 356
            M T SK+Y++ E   HNT D  WI+VH  +YD T +L DHPGG D +L     D T+EFE A HS  A++LLE + IGEL T+
Sbjct:  541 MNTASKMYSISEVRKHNTADSAWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFE-AIHSDKAKKLLEDYRIGELITT 622          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA_CICIN (Nitrate reductase [NADH] OS=Cichorium intybus GN=NIA PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.058e-17
Identity = 47/104 (45.19%), Postives = 61/104 (58.65%), Query Frame = 3
Query:   42 VRISEKLVEREGERLTKSPPIKMPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDT 353
            + IS +L     ++   SP   M T S  +TM E   HN+ D  WIVVH  +YD TS+L DHPGG D +L     D T+EF DA HS  A++LLE + +GEL T
Sbjct:  510 LEISSELAHPTLKKSVSSP--FMNTTSLTFTMSEVKKHNSADSAWIVVHGHIYDCTSFLKDHPGGSDSILLNAGTDCTEEF-DAIHSDKAKKLLEEYRVGELIT 610          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA1_BRANA (Nitrate reductase [NADH], clone PBNBR1405 OS=Brassica napus GN=NIA1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.058e-17
Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 3
Query:   66 EREGERLTKSPPIK--------MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 356
            ER+ E+ ++S P          M T SK+Y+M E   HN+ +  WI+VH  +YD T +L DHPGG D +L     D T+EFE A HS  A++LLE + IGEL T+
Sbjct:  513 ERQIEKSSESHPTLKKSVSTPFMNTASKMYSMSEVRKHNSAESAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTEEFE-AIHSDKAKKLLEDYRIGELITT 616          
The following BLAST results are available for this feature:
BLAST of CX294046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CYB5_MOUSE7.803e-1837.96Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2[more]
NIA2_SOYBN1.019e-1745.37Inducible nitrate reductase [NADH] 2 OS=Glycine ma... [more]
CYB5_RAT1.019e-1736.22Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 S... [more]
CYB5_YEAST1.738e-1738.54Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 ... [more]
NIA1_SOYBN2.270e-1745.37Inducible nitrate reductase [NADH] 1 OS=Glycine ma... [more]
NIA2_TOBAC3.873e-1750.60Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN... [more]
NIA1_TOBAC3.873e-1750.60Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN... [more]
NIA1_ARATH3.873e-1750.60Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana... [more]
NIA_CICIN5.058e-1745.19Nitrate reductase [NADH] OS=Cichorium intybus GN=N... [more]
NIA1_BRANA5.058e-1743.81Nitrate reductase [NADH], clone PBNBR1405 OS=Brass... [more]

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Properties
Property NameValue
Genbank descriptionC05005C09SK FlavRip1 Citrus clementina cDNA clone C05005C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294046 ID=CX294046; Name=CX294046; organism=Citrus clementina; type=EST; length=561bp
CCTGAGATGCCAAATCCCAATTCTTGAGCACAGGGTTGAAGGTGAGGATC
TCAGAAAAGCTTGTTGAGAGAGAGGGAGAGCGGCTGACCAAAAGCCCACC
AATAAAGATGCCGACTCTCTCAAAGCTCTACACGATGCAAGAAGCTGCTC
ACCACAACACCAAAGACGATTGCTGGATTGTCGTTCATAACAAGGTGTAT
GATGTCACTTCATATTTGGATGATCATCCTGGTGGAGATGATGTAGTTCT
TGCTGCAACGGCAAAAGATGCAACAGACGAATTTGAAGATGCTGGGCATA
GCAAAGATGCAAGGGAACTCCTGGAGAGCTTTTGTATCGGTGAGCTTGAC
ACTTCATCTCCATTGATCCCAGAACTTGAAATTTCGTCTAAAAGGCAACC
GTCAGATTTTGCACTAAAGCTCAAGAACTTGACAAAGGAATACTGGGCTG
CTCCTGTTGCTGTTGTTGGCATCTCCGTGATGGTTGGCTTCTTGTGCTTG
CGCAAGAAGTGAACCAACGCATCTCCATTAACTGTCTAGTATGCTGCATG
AATTTTGGATT
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