CX294046

Overview
NameCX294046
Unique NameCX294046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA_VOLCA (Nitrate reductase [NADH] OS=Volvox carteri GN=NITA PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.922e-16
Identity = 43/105 (40.95%), Postives = 58/105 (55.24%), Query Frame = 3
Query:   69 REGERLTKSPPIKMPTLS-------KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSP 362
            +EG     +P    P ++       + YTM+E A HNT++ CW V   KVYD T YLD+HPGG + +L     DATDEF    HS  A+ +L  + IG+L  S P
Sbjct:  473 KEGATAAAAPAAPPPVVAAAANGGPRQYTMEEVAAHNTEESCWFVHGGKVYDATPYLDEHPGGAESILIVAGADATDEFNSI-HSSKAKAMLAQYYIGDLVASKP 576          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA2_BRANA (Nitrate reductase [NADH], clone PBNBR1412 OS=Brassica napus GN=NIA2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.922e-16
Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 3
Query:   66 EREGERLTKSPPIK--------MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 356
            ER+ E  ++S PI         M T +K+Y+M E   HN+ +  WI+VH  +YD T +L DHPGG D +L     D T+EFE A HS  A++LLE + IGEL T+
Sbjct:  513 ERQLEISSESNPILKKSVSSPFMNTSAKMYSMSEVRKHNSVESAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTEEFE-AIHSDKAKKLLEDYRIGELITT 616          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA_LOTJA (Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 42/92 (45.65%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  108 MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGEL-------DTSSP 362
            M T +K+Y++ E   HN+ D  WI+VH  VYD T +L DHPGG D +L     D T+EFE A HS  A+++LE + +GEL       D+SSP
Sbjct:  517 MNTFTKMYSLSEVKKHNSPDSAWIIVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFE-AIHSDKAKKMLEDYRVGELITTGYTSDSSSP 607          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA1_PHAVU (Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris GN=NIA1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 3
Query:   66 EREGERLTKSPPIK--------MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 356
            E++ E+ ++S PI         M T +K Y++ E   HN +D  WI+V+  VYD T +L DHPGG+D +L     D T+EFE A HS  A+++LE + IGEL T+
Sbjct:  489 EKQLEKSSESNPILKKSVSSPFMNTATKSYSLSEVRRHNNRDSAWIIVNGHVYDCTRFLKDHPGGEDSILLNAGTDCTEEFE-AIHSDKAKKMLEDYRIGELMTT 592          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA1_ORYSJ (Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. japonica GN=NIA1 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = 3
Query:   75 GERLTKSPPIKMPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 356
            G + + S P    T  K +TM E   H+++D  WIVVH  VYD T++L DHPGG D +L     D T+EF DA HS  A+ LL+++ IGEL T+
Sbjct:  526 GLKRSTSTPFMNTTDGKQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEF-DAIHSDKAKALLDTYRIGELITT 618          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA7_HORVU (Nitrate reductase [NAD(P)H] OS=Hordeum vulgare GN=NAR-7 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.282e-16
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 3
Query:   78 ERLTKSPPIKMPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGEL 347
            +R T +P   M T S  +TM E   H +KD  WIVVH  VYD T++L DHPGG D +L     D T+EF DA HS  AR LLE + +GEL
Sbjct:  503 KRSTSTP--FMSTASAQFTMSEVRRHASKDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGSDCTEEF-DAIHSAKARGLLEMYRVGEL 589          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA_BETVE (Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN=NIA1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.304e-16
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 3
Query:  108 MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 356
            M T SK+++M E   HN+ +  WI+VH  +YD T +L DHPGG D +L     D T+EF DA HS  A+++LE + IGEL T+
Sbjct:  524 MNTSSKMFSMSEVKKHNSAESAWIIVHGHIYDCTHFLKDHPGGADSILINAGTDCTEEF-DAIHSDKAKKMLEDYRIGELITT 605          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA_CUCMA (Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.539e-16
Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  108 MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 356
            M T S  YT+ E   HN+    WI+VH  VYD T +L DHPGG D +L     D T+EF DA HS  A+++LE + IGEL T+
Sbjct:  539 MNTASNTYTLSEVKKHNSPQSAWIIVHGHVYDCTRFLKDHPGGSDSILINAGTDCTEEF-DAIHSDKAKKMLEDYRIGELITT 620          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA2_PHAVU (Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris GN=NIA2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.246e-15
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 3
Query:  108 MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 356
            M T SK++++ E   H++ D  WI+VH  VYD T +L DHPGG D +L     D T+EF DA HS  A+++LE + IGEL T+
Sbjct:  509 MNTASKMFSVSEVKKHSSPDSAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEF-DAIHSDKAKKMLEDYRIGELITT 590          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA2_HORVU (Nitrate reductase [NADH] (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.246e-15
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 3
Query:   75 GERLTKSPPIKMPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 356
            G + + S P       K +TM E   H +K+  WIVVH  VYD T++L DHPGG D +L     D T+EF DA HS  A+ LL+++ IGEL T+
Sbjct:  520 GLKRSTSTPFMNTAGDKQFTMSEVRKHGSKESAWIVVHGHVYDCTAFLKDHPGGADSILINAGSDCTEEF-DAIHSDKAKALLDTYRIGELITT 612          
The following BLAST results are available for this feature:
BLAST of CX294046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
NIA_VOLCA1.922e-1640.95Nitrate reductase [NADH] OS=Volvox carteri GN=NITA... [more]
NIA2_BRANA1.922e-1643.81Nitrate reductase [NADH], clone PBNBR1412 OS=Brass... [more]
NIA_LOTJA2.510e-1645.65Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA... [more]
NIA1_PHAVU3.278e-1641.90Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris G... [more]
NIA1_ORYSJ3.278e-1645.74Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. ... [more]
NIA7_HORVU4.282e-1650.00Nitrate reductase [NAD(P)H] OS=Hordeum vulgare GN=... [more]
NIA_BETVE7.304e-1646.99Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN... [more]
NIA_CUCMA9.539e-1648.19Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 ... [more]
NIA2_PHAVU1.246e-1546.99Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris G... [more]
NIA2_HORVU1.246e-1544.68Nitrate reductase [NADH] (Fragment) OS=Hordeum vul... [more]

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Properties
Property NameValue
Genbank descriptionC05005C09SK FlavRip1 Citrus clementina cDNA clone C05005C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294046 ID=CX294046; Name=CX294046; organism=Citrus clementina; type=EST; length=561bp
CCTGAGATGCCAAATCCCAATTCTTGAGCACAGGGTTGAAGGTGAGGATC
TCAGAAAAGCTTGTTGAGAGAGAGGGAGAGCGGCTGACCAAAAGCCCACC
AATAAAGATGCCGACTCTCTCAAAGCTCTACACGATGCAAGAAGCTGCTC
ACCACAACACCAAAGACGATTGCTGGATTGTCGTTCATAACAAGGTGTAT
GATGTCACTTCATATTTGGATGATCATCCTGGTGGAGATGATGTAGTTCT
TGCTGCAACGGCAAAAGATGCAACAGACGAATTTGAAGATGCTGGGCATA
GCAAAGATGCAAGGGAACTCCTGGAGAGCTTTTGTATCGGTGAGCTTGAC
ACTTCATCTCCATTGATCCCAGAACTTGAAATTTCGTCTAAAAGGCAACC
GTCAGATTTTGCACTAAAGCTCAAGAACTTGACAAAGGAATACTGGGCTG
CTCCTGTTGCTGTTGTTGGCATCTCCGTGATGGTTGGCTTCTTGTGCTTG
CGCAAGAAGTGAACCAACGCATCTCCATTAACTGTCTAGTATGCTGCATG
AATTTTGGATT
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