CX294046

Overview
NameCX294046
Unique NameCX294046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig534 contig Ccv1_Contig534:1..561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA1_HORVU (Nitrate reductase [NADH] OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.246e-15
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 3
Query:   75 GERLTKSPPIKMPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 356
            G + + S P       K +TM E   H +K+  WIVVH  VYD T++L DHPGG D +L     D T+EF DA HS  A+ LL+++ IGEL T+
Sbjct:  523 GLKRSTSTPFMNTAGDKQFTMSEVRKHGSKESAWIVVHGHVYDCTAFLKDHPGGADSILINAGSDCTEEF-DAIHSDKAKALLDTYRIGELITT 615          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA1_MAIZE (Nitrate reductase [NADH] (Fragment) OS=Zea mays PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.125e-15
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 3
Query:   78 ERLTKSPPIKMPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 356
            +R T +P +    + K +TM E   H +++  WIVVH  VYD T +L DHPGG D +L     D T+EF DA HS  A+ LL+++ IGEL T+
Sbjct:  235 KRSTSTPFMNTTDVGKEFTMSEVRKHASQESAWIVVHGHVYDCTKFLKDHPGGADSILINAGTDCTEEF-DAIHSDKAKALLDTYRIGELITT 326          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA3_MAIZE (Nitrate reductase [NADH] 3 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.625e-15
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 3
Query:  114 TLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS 356
            T ++ +TM E   H ++D  WIVVH  VYD T++L DHPGG D +L     D T+EF DA HS  A+ELL+++ IG+L T+
Sbjct:  518 TTNQQFTMSEVRKHASQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEF-DAIHSDKAKELLDTYRIGDLVTT 597          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA_PHYIN (Nitrate reductase [NADPH] OS=Phytophthora infestans GN=NIAA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.799e-14
Identity = 42/113 (37.17%), Postives = 60/113 (53.10%), Query Frame = 3
Query:   87 TKSPPIKMPTLSKLYTM--QEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQPSDFALK 419
            T  P +    LS+L  +   E A HN+K  CW +  + VYD T +LD+HPGG   +L     D TDEFE   HS  A ++L+ +CIG   ++       + SS  + +D ALK
Sbjct:  524 TPKPGLTADELSELPLIFADEVAKHNSKKSCWFICRDLVYDATPFLDEHPGGATSILLCGGTDCTDEFESI-HSTKAWQMLKKYCIGRCSSTEDDTGTSDTSSDHEETDVALK 635          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB51_SCHPO (Probable cytochrome b5 1 OS=Schizosaccharomyces pombe GN=SPBC29A10.16c PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.166e-13
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 3
Query:  123 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQPSDF 410
            K +  +E   HN   D ++V++ KVYDV+++ DDHPGG D++L    +DAT  ++D GHS  A ELLE   IG+L   +    E  +   ++P  F
Sbjct:    4 KYFEPEEIVEHNNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDIGHSIAADELLEEMYIGDLKPGT----EERLKELKKPRSF 95          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA_CHLVU (Nitrate reductase [NADH] (Fragment) OS=Chlorella vulgaris PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.989e-13
Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = 3
Query:   84 LTKSPPIKMPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGEL 347
            +T +PP   P  +K +TM E   H T +  W VV  KVYD T +L DHPGG D +L     DATDEF +A HS  A++ L  + IGEL
Sbjct:  205 VTVAPP-PAPAGAKSFTMAEVETHTTMESAWFVVDGKVYDATPFLKDHPGGADSILLVAGIDATDEF-NAIHSLKAKKQLLEYYIGEL 290          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: FAD5A_DICDI (Delta(5) fatty acid desaturase A OS=Dictyostelium discoideum GN=fadA PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.357e-12
Identity = 40/111 (36.04%), Postives = 59/111 (53.15%), Query Frame = 3
Query:  123 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKD-ARELLESFCIGELDTSSPLIPELEISSKRQPSDFALKLKNLTKEYWAA 452
            K Y+  E A HNT++DCW+ V  KVYD+T ++  HPGG +V+L A  +D T+ FE      D    +L+++ IG        I   E     Q SDF   LK   ++++ A
Sbjct:   14 KQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKEVLLLAAGRDVTNLFESYHPMSDKPTSILKNYEIG-------YISSYEHPKFVQKSDFYKTLKERVRKHFKA 117          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA_BEABA (Nitrate reductase [NADPH] OS=Beauveria bassiana GN=NIA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.862e-11
Identity = 43/142 (30.28%), Postives = 76/142 (53.52%), Query Frame = 3
Query:   33 GLKVRISEKLVEREGERLTKSPPIKMPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQPSDFALKLKNLTKEYWAAPV 458
            G K    E+ V  E E   K   +  P + ++ +++E   H  + + W VV+  VY+ T YLD+HPGG   ++ A A+DAT+EF    HS++A+ ++  + IG L+ ++     LE S++  P+    +   L  +YW+  +
Sbjct:  509 GEKTAAEEEQVLAEPE---KEICMTNPKVVRIISLEELKAHEGEMEPWFVVNGHVYNGTPYLDNHPGGATSIINAAAQDATEEFMTI-HSENAKAMMPQYHIGTLNDAAR--KALEGSAEESPASDPTRAVFLQPKYWSKAI 644          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA_NEUCR (Nitrate reductase [NADPH] OS=Neurospora crassa GN=nit-3 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 3.175e-11
Identity = 38/114 (33.33%), Postives = 67/114 (58.77%), Query Frame = 3
Query:   78 ERLTKSPPIKMPTL-----SKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQPS 404
            E + K  P+K  ++     ++L T++E   H+ +++ W VV+ +VY+ T +L+ HPGG   +  A  +D TDEF  A HS++A+ ++ ++ IG L  S+P    L+ SS   P+
Sbjct:  598 ENVVKEEPVKEISMVDEKVTRLITLEELRQHDGEEEPWFVVNGQVYNGTPFLEGHPGGAASITGAAGQDVTDEFL-AIHSENAKAMMPTYHIGTLTPSAP--AALKSSSTSDPA 708          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA_LEPMC (Nitrate reductase [NADPH] OS=Leptosphaeria maculans GN=NIAD PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.147e-11
Identity = 40/130 (30.77%), Postives = 71/130 (54.62%), Query Frame = 3
Query:   66 EREGERLTKSPPIKMPT--LSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQPSDFALKLKNLTKEYWA 449
            E E   + +   IKM    ++++  + E   H + +  W VV+++VYD TS+L+ HPGG   +++A   DA+DEF  A HS+ A+ ++ ++ IG L  ++     LE  + +Q S  +L+   L    W+
Sbjct:  516 ELENTAVEEVKEIKMTKDGVNRIVELDELKWHESAEYPWFVVNDEVYDGTSFLEGHPGGAQSIISAAGLDASDEFM-AIHSETAKAMMPAYHIGTLSPTASKQLSLEEPTSKQASSSSLRPTFLDSRTWS 644          
The following BLAST results are available for this feature:
BLAST of CX294046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
NIA1_HORVU1.246e-1544.68Nitrate reductase [NADH] OS=Hordeum vulgare PE=3 S... [more]
NIA1_MAIZE2.125e-1544.09Nitrate reductase [NADH] (Fragment) OS=Zea mays PE... [more]
NIA3_MAIZE3.625e-1548.15Nitrate reductase [NADH] 3 OS=Zea mays PE=3 SV=1[more]
NIA_PHYIN1.799e-1437.17Nitrate reductase [NADPH] OS=Phytophthora infestan... [more]
CYB51_SCHPO1.166e-1338.54Probable cytochrome b5 1 OS=Schizosaccharomyces po... [more]
NIA_CHLVU1.989e-1346.59Nitrate reductase [NADH] (Fragment) OS=Chlorella v... [more]
FAD5A_DICDI8.357e-1236.04Delta(5) fatty acid desaturase A OS=Dictyostelium ... [more]
NIA_BEABA1.862e-1130.28Nitrate reductase [NADPH] OS=Beauveria bassiana GN... [more]
NIA_NEUCR3.175e-1133.33Nitrate reductase [NADPH] OS=Neurospora crassa GN=... [more]
NIA_LEPMC4.147e-1130.77Nitrate reductase [NADPH] OS=Leptosphaeria maculan... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05005C09SK FlavRip1 Citrus clementina cDNA clone C05005C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294046 ID=CX294046; Name=CX294046; organism=Citrus clementina; type=EST; length=561bp
CCTGAGATGCCAAATCCCAATTCTTGAGCACAGGGTTGAAGGTGAGGATC
TCAGAAAAGCTTGTTGAGAGAGAGGGAGAGCGGCTGACCAAAAGCCCACC
AATAAAGATGCCGACTCTCTCAAAGCTCTACACGATGCAAGAAGCTGCTC
ACCACAACACCAAAGACGATTGCTGGATTGTCGTTCATAACAAGGTGTAT
GATGTCACTTCATATTTGGATGATCATCCTGGTGGAGATGATGTAGTTCT
TGCTGCAACGGCAAAAGATGCAACAGACGAATTTGAAGATGCTGGGCATA
GCAAAGATGCAAGGGAACTCCTGGAGAGCTTTTGTATCGGTGAGCTTGAC
ACTTCATCTCCATTGATCCCAGAACTTGAAATTTCGTCTAAAAGGCAACC
GTCAGATTTTGCACTAAAGCTCAAGAACTTGACAAAGGAATACTGGGCTG
CTCCTGTTGCTGTTGTTGGCATCTCCGTGATGGTTGGCTTCTTGTGCTTG
CGCAAGAAGTGAACCAACGCATCTCCATTAACTGTCTAGTATGCTGCATG
AATTTTGGATT
back to top