CX294046

Overview
NameCX294046
Unique NameCX294046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: NIA_FUSOX (Nitrate reductase [NADPH] OS=Fusarium oxysporum GN=NIA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.147e-11
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 3
Query:  111 PTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLI 368
            P +++  T++E   H+ +++ W VV  +VYD T YL  HPGG   +  A  +DAT+EF  A HS++A+ +L ++ IG LD  S  I
Sbjct:  543 PQINRKITIEELKAHSGEEEPWFVVKGEVYDGTPYLSGHPGGAASIFGAAGQDATEEFM-AIHSENAKAMLPTYHIGTLDEESRAI 627          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: FAD5B_DICDI (Delta(5) fatty acid desaturase B OS=Dictyostelium discoideum GN=fadB PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.147e-11
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 3
Query:  123 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDAR-ELLESFCIGELDT 353
            KLYT  E + HN K+D WI+V  KVY++T ++  HPGG+D++L +  +DAT+ FE      D    L++ + IG + +
Sbjct:   13 KLYTWDEVSKHNQKNDLWIIVDGKVYNITKWVPLHPGGEDILLLSAGRDATNLFESYHPMTDKHYSLIKQYEIGYISS 90          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: SCS7_YEAST (Inositolphosphorylceramide-B C-26 hydroxylase OS=Saccharomyces cerevisiae GN=SCS7 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.417e-11
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  123 KLYTMQEAAHHNTKDDCWIVVHN-KVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAG---HSKDARELLE-SFCIGELDT 353
            +L++ +    HNT +DCW+   N K+YDVT +L +HPGGD+ +L    KD T+  +D+    HS  A E+LE  + IG L T
Sbjct:   10 ELFSKKTVQEHNTANDCWVTYQNRKIYDVTRFLSEHPGGDESILDYAGKDITEIMKDSDVHEHSDSAYEILEDEYLIGYLAT 91          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_ECTVA (Soluble cytochrome b558 OS=Ectothiorhodospira vacuolata PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 28/79 (35.44%), Postives = 50/79 (63.29%), Query Frame = 3
Query:  126 LYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAG----HSKDARELLESFCIGELD 350
            ++T+++ A H++ DDCW+ +H KVYD+T Y+ +HPG   ++L    +++T+ +E       HS  A  LL+ + IG L+
Sbjct:   10 VFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPHSSLAARLLQRYLIGTLE 88          
The following BLAST results are available for this feature:
BLAST of CX294046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
NIA_FUSOX4.147e-1139.53Nitrate reductase [NADPH] OS=Fusarium oxysporum GN... [more]
FAD5B_DICDI4.147e-1139.74Delta(5) fatty acid desaturase B OS=Dictyostelium ... [more]
SCS7_YEAST5.417e-1141.46Inositolphosphorylceramide-B C-26 hydroxylase OS=S... [more]
CYB5_ECTVA9.239e-1135.44Soluble cytochrome b558 OS=Ectothiorhodospira vacu... [more]

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Properties
Property NameValue
Genbank descriptionC05005C09SK FlavRip1 Citrus clementina cDNA clone C05005C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294046 ID=CX294046; Name=CX294046; organism=Citrus clementina; type=EST; length=561bp
CCTGAGATGCCAAATCCCAATTCTTGAGCACAGGGTTGAAGGTGAGGATC
TCAGAAAAGCTTGTTGAGAGAGAGGGAGAGCGGCTGACCAAAAGCCCACC
AATAAAGATGCCGACTCTCTCAAAGCTCTACACGATGCAAGAAGCTGCTC
ACCACAACACCAAAGACGATTGCTGGATTGTCGTTCATAACAAGGTGTAT
GATGTCACTTCATATTTGGATGATCATCCTGGTGGAGATGATGTAGTTCT
TGCTGCAACGGCAAAAGATGCAACAGACGAATTTGAAGATGCTGGGCATA
GCAAAGATGCAAGGGAACTCCTGGAGAGCTTTTGTATCGGTGAGCTTGAC
ACTTCATCTCCATTGATCCCAGAACTTGAAATTTCGTCTAAAAGGCAACC
GTCAGATTTTGCACTAAAGCTCAAGAACTTGACAAAGGAATACTGGGCTG
CTCCTGTTGCTGTTGTTGGCATCTCCGTGATGGTTGGCTTCTTGTGCTTG
CGCAAGAAGTGAACCAACGCATCTCCATTAACTGTCTAGTATGCTGCATG
AATTTTGGATT
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