CX294050

Overview
NameCX294050
Unique NameCX294050
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length382
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig118 contig Ccv1_Contig118:516..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294050 vs. ExPASy Swiss-Prot
Match: RL10_RAT (60S ribosomal protein L10 OS=Rattus norvegicus GN=Rpl10 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.800e-11
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 3 
Query:    3 RAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 161
            RAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  154 RAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206
[Close]
BLAST of CX294050 vs. ExPASy Swiss-Prot
Match: RL10_PAPAN (60S ribosomal protein L10 OS=Papio anubis GN=RPL10 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.800e-11
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 3 
Query:    3 RAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 161
            RAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  154 RAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206
[Close]
BLAST of CX294050 vs. ExPASy Swiss-Prot
Match: RL10_MOUSE (60S ribosomal protein L10 OS=Mus musculus GN=Rpl10 PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.800e-11
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 3 
Query:    3 RAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 161
            RAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  154 RAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206
[Close]
BLAST of CX294050 vs. ExPASy Swiss-Prot
Match: RL10_MACFA (60S ribosomal protein L10 OS=Macaca fascicularis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.800e-11
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 3 
Query:    3 RAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 161
            RAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  154 RAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206
[Close]
BLAST of CX294050 vs. ExPASy Swiss-Prot
Match: RL10_HUMAN (60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4)

HSP 1 Score: 66.2402 bits (160), Expect = 5.800e-11
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 3 
Query:    3 RAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 161
            RAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  154 RAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206
The following BLAST results are available for this feature:
BLAST of CX294050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL10_RAT5.800e-1154.7260S ribosomal protein L10 OS=Rattus norvegicus GN=... [more]
RL10_PAPAN5.800e-1154.7260S ribosomal protein L10 OS=Papio anubis GN=RPL10... [more]
RL10_MOUSE5.800e-1154.7260S ribosomal protein L10 OS=Mus musculus GN=Rpl10... [more]
RL10_MACFA5.800e-1154.7260S ribosomal protein L10 OS=Macaca fascicularis G... [more]
RL10_HUMAN5.800e-1154.7260S ribosomal protein L10 OS=Homo sapiens GN=RPL10... [more]

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Properties
Property NameValue
Genbank descriptionC05005D02SK FlavRip1 Citrus clementina cDNA clone C05005D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294050 ID=CX294050; Name=CX294050; organism=Citrus clementina; type=EST; length=382bp
GCCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTATTGTCAGCAGG
AAATGGGGATTTACCAAGTTCAGCCGTGCTGATTATCTGCGGTGGAAGTC
GGAGAACAGGATTGTCCCAGATGGTGTGAATGCCAAGCTTCTCGGATGTC
ATGGTCCTTTGGCTCAACGTCAACCTGGAAGAGCTTTCCTGGAAGCAACA
ACCTAAGATATTTACTGTCTCAAAATAGCAGAGCTGGGTCTACTGTCTAG
TTTATTATTTTCCATTTCGTACCTTTTCTCAGTTGAACTGGATTTCTCAA
GTTGAAGTGACATGTTTCTTTGGTTTAAAAAAAAAAAAAAAAAAACTCGG
GGGGGGGCCCGGTCCCCATTTCCCCCTATAGG
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