CX294052

Overview
NameCX294052
Unique NameCX294052
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length366
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig118 contig Ccv1_Contig118:530..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294052 vs. ExPASy Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.558e-21
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 1
Query:    1 KFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEATT 189
            KFPGRQKIIVSRKWGFTKF+RA+Y + ++  RIVPDGVNAK L  HGPLA RQPG AF+ AT+
Sbjct:  158 KFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPLANRQPGSAFISATS 220          
BLAST of CX294052 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.681e-19
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 1
Query:    1 KFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 186
            KFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA+R PG+AFL  T
Sbjct:  158 KFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAET 219          
BLAST of CX294052 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.681e-19
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 1
Query:    1 KFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 186
            KFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA+R PG+AFL  T
Sbjct:  158 KFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAET 219          
BLAST of CX294052 vs. ExPASy Swiss-Prot
Match: RL10_DICDI (60S ribosomal protein L10 OS=Dictyostelium discoideum GN=rpl10 PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.694e-11
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 KFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQ 153
            KFPGRQKI+VS+KWGFT ++R  Y + K++ R++ DG N K++  HG LAQ
Sbjct:  158 KFPGRQKIVVSKKWGFTAYNREAYQKLKADGRLMNDGANVKVITNHGTLAQ 208          
BLAST of CX294052 vs. ExPASy Swiss-Prot
Match: RL10_DROME (60S ribosomal protein L10 OS=Drosophila melanogaster GN=Qm PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.437e-11
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:    1 KFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLA 150
            KFPGRQKI VS+KWGFTK+ R  Y   + +NR+ PDG N K    HGP+A
Sbjct:  158 KFPGRQKIYVSKKWGFTKYERERYEELRDDNRLEPDGCNVKYRPEHGPIA 207          
The following BLAST results are available for this feature:
BLAST of CX294052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL103_ARATH3.558e-2173.0260S ribosomal protein L10-3 OS=Arabidopsis thalian... [more]
RL101_ORYSJ5.681e-1969.3560S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ORYSI5.681e-1969.3560S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL10_DICDI5.694e-1154.9060S ribosomal protein L10 OS=Dictyostelium discoid... [more]
RL10_DROME7.437e-1158.0060S ribosomal protein L10 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionC05005D04SK FlavRip1 Citrus clementina cDNA clone C05005D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294052 ID=CX294052; Name=CX294052; organism=Citrus clementina; type=EST; length=366bp
AAGTTTCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGATTTAC
CAAGTTCAGCCGTGCTGATTATCTGCGGTGGAAGTCGGAGAACAGGATTG
TCCCAGATGGTGTGAATGCCAAGCTTCTCGGATGTCATGGTCCTTTGGCT
CAACGTCAACCTGGAAGAGCTTTCCTGGAAGCAACAACCTAAGATATTTA
CTGTCTCAAAATAGCAGAGCTGGGTCTACTGTCTAGTTTATTATTTTCCA
TTTCGTACCTTTTCTCAGTTGAACTGGATTTCTCAAGTTGAAGTGACATG
TTTCTTTGGTTTAAAAAAAAAAAAAAAAAAACTCGGGGGGGGGCCCGGTC
CCCATTTCCCCCTATA
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