CX294063

Overview
NameCX294063
Unique NameCX294063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length539
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294063 vs. ExPASy Swiss-Prot
Match: VATL_DROME (V-type proton ATPase 16 kDa proteolipid subunit OS=Drosophila melanogaster GN=Vha16 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.406e-12
Identity = 43/145 (29.66%), Postives = 68/145 (46.90%), Query Frame = 1
Query:  100 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEXXXXXXXXXXXXLQTKLESVPASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALELFGVIVGI 534
            F  +G A AI  S LGAA+G   +G+ +   ++  P +  K++I V+               +   LE      +Y       G+    +G+ VGF+ L  G  +GI+G +     AQ   LFV +++I IF   L L+G+IV I
Sbjct:   16 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALEEPSKYSLYR------GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAI 154          
BLAST of CX294063 vs. ExPASy Swiss-Prot
Match: VATL_HELVI (V-type proton ATPase 16 kDa proteolipid subunit OS=Heliothis virescens GN=VHA16 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.587e-12
Identity = 43/145 (29.66%), Postives = 72/145 (49.66%), Query Frame = 1
Query:  100 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEXXXXXXXXXXXXLQTKLESVPASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALELFGVIVGI 534
            F  +G A AI  S LGAA+G   +G+ +   ++  P +  K++I V+               +   L++ P++      +L  G+    +G+ VGF+ L  G  +GI+G +     AQ   LFV +++I IF   L L+G+IV I
Sbjct:   11 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDA-PSNNY----TLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAI 150          
BLAST of CX294063 vs. ExPASy Swiss-Prot
Match: VATL_NEPNO (V-type proton ATPase 16 kDa proteolipid subunit OS=Nephrops norvegicus PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 43/149 (28.86%), Postives = 70/149 (46.98%), Query Frame = 1
Query:   88 SPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEXXXXXXXXXXXXLQTKLESVPASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALELFGVIVGI 534
            SP+ F  +G A A+  S LGAA+G   +G  +   ++  P +  K +I V+               +  KL+  P   +Y       G+    +G+ VG + L  G  +GI+G +     AQ   L+V +++I IF   L L+G+IV I
Sbjct:   10 SPF-FGVMGAASAMVFSALGAAYGTAKSGVGISAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIAGKLDEAPTYTLYQ------GFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIVAI 151          
BLAST of CX294063 vs. ExPASy Swiss-Prot
Match: VATL_DICDI (V-type proton ATPase proteolipid subunit OS=Dictyostelium discoideum GN=vatP PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.765e-11
Identity = 46/169 (27.22%), Postives = 78/169 (46.15%), Query Frame = 1
Query:   40 VMLGESSSWSRALVNISPYT---FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEXXXXXXXXXXXXLQTKLESVPASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALELFGVIVGIL 537
            ++ GE+++  R + +  P     F A+G+  A+  +V+GAA+G       +    +  P +  K  I VIF              L      V   +  A  +L   +    +G+ VG   L  G+ +GI+G S   +  Q   L+V +++I IF  AL L+G+I+GIL
Sbjct:    8 LLSGEATAVERIITDACPVYAPFFGAMGVTAALVFTVMGAAYGTAKASVGISNMGVMKPDLVIKAFIPVIFAGVIAIYGLIICVIL------VGGIKPNANYTLMKSFTDLGAGLTVGLCGLAAGMAIGIVGDSGVRAFGQQPKLYVIMMLILIFSEALGLYGLIIGIL 170          
The following BLAST results are available for this feature:
BLAST of CX294063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
VATL_DROME3.406e-1229.66V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_HELVI7.587e-1229.66V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_NEPNO9.909e-1228.86V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_DICDI3.765e-1127.22V-type proton ATPase proteolipid subunit OS=Dictyo... [more]

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Properties
Property NameValue
Genbank descriptionC05005E07SK FlavRip1 Citrus clementina cDNA clone C05005E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294063 ID=CX294063; Name=CX294063; organism=Citrus clementina; type=EST; length=539bp
AAAAAAAAGAAGAAAAAATTGAAAAAAATGTCGGGCTCCGTAATGTTGGG
AGAATCAAGCTCATGGTCACGCGCGCTCGTTAATATATCACCATATACCT
TCTCCGCCATCGGCATCGCTGTCGCTATCGGCGTCTCCGTCCTCGGCGCC
GCCTGGGGGATCTACATAACGGGGAGTAGTTTAATCGGTGCCGCAATCAA
GGCTCCTCGTATCACCTCCAAGAATCTCATCAGTGTAATTTTTTGTGAAG
CTGTTGCTATATATGGGGTCATTGTTGCAATTATTTTACAAACAAAGCTA
GAAAGTGTTCCGGCATCACAGATATATGCACCAGAATCACTAAGAGCTGG
ATATGCCATCTTTGCCTCTGGGATCATCGTGGGCTTTGCTAACCTAGTTT
GTGGGTTGTGTGTAGGAATAATTGGAAGCAGCTGTGCATTGTCTGATGCC
CAAAACTCGTCCTTGTTTGTGAAGATTTTGGTGATTGAGATCTTTGGTAG
TGCTCTTGAGTTGTTTGGAGTGATTGTTGGAATATTATG
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