CX294065

Overview
NameCX294065
Unique NameCX294065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_CHLPN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia pneumoniae GN=ispG PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.124e-25
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  328 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGRL 558
            +F  LQ   +R  KTEY+SCP CGRTLFDL+E++  IR++T HLPG+ IAIMGCIVNGPGEMADADFG+VG   G +
Sbjct:  495 AFGTLQNAGVRLVKTEYISCPMCGRTLFDLEEVTTRIRKRTQHLPGLKIAIMGCIVNGPGEMADADFGFVGSKTGMI 571          
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis GN=ispG PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.045e-24
Identity = 56/99 (56.57%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  304 DFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGRLP-DVGRLCERVCM 594
            D    R   F +LQ   +R+   EYVSCP CGRTLFDL  +S  IRE+T HLP G+ IA+MGCIVNGPGEMADADFGYVG  PG +   V   C + C+
Sbjct:  481 DIKLSRTLGFLILQSANIRSVTVEYVSCPGCGRTLFDLLAVSQRIRERTQHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSCI 579          
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=ispG PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.045e-24
Identity = 56/99 (56.57%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  304 DFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGRLP-DVGRLCERVCM 594
            D    R   F +LQ   +R+   EYVSCP CGRTLFDL  +S  IRE+T HLP G+ IA+MGCIVNGPGEMADADFGYVG  PG +   V   C + C+
Sbjct:  481 DIKLSRTLGFLILQSANIRSVTVEYVSCPGCGRTLFDLLAVSQRIRERTKHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSCI 579          
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=ispG PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.045e-24
Identity = 56/99 (56.57%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  304 DFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGRLP-DVGRLCERVCM 594
            D    R   F +LQ   +R+   EYVSCP CGRTLFDL  +S  IRE+T HLP G+ IA+MGCIVNGPGEMADADFGYVG  PG +   V   C + C+
Sbjct:  481 DIKLSRTLGFLILQSANIRSVTVEYVSCPGCGRTLFDLLAVSQRIRERTQHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSCI 579          
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_CHLT2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=ispG PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.045e-24
Identity = 56/99 (56.57%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  304 DFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGRLP-DVGRLCERVCM 594
            D    R   F +LQ   +R+   EYVSCP CGRTLFDL  +S  IRE+T HLP G+ IA+MGCIVNGPGEMADADFGYVG  PG +   V   C + C+
Sbjct:  481 DIKLSRTLGFLILQSANIRSVTVEYVSCPGCGRTLFDLLAVSQRIRERTKHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSCI 579          
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_CHLFF (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila felis (strain Fe/C-56) GN=ispG PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.045e-24
Identity = 51/90 (56.67%), Postives = 63/90 (70.00%), Query Frame = 1
Query:  289 EAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGRL 558
            + P      +R+ +F  LQ   +R  KTEY+SCP CGRTLFDL E++  IR KT HL G+ IA+MGCIVNGPGEMADADFG+VG   G +
Sbjct:  481 DLPNIPLPTVREIAFGTLQSAGVRLVKTEYISCPGCGRTLFDLPEVTTRIRNKTKHLVGLKIAVMGCIVNGPGEMADADFGFVGSKTGMI 570          
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_PARD8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ispG PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.782e-24
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  331 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGRL 558
            F +LQ  R R +KTEY+SCPSCGRTL+DLQ   A I+E TSHL G+ I IMGCIVNGPGEMADAD+GYVG   G++
Sbjct:  502 FGILQATRTRISKTEYISCPSCGRTLYDLQTTIARIKEATSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRGQI 577          
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_PORGI (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Porphyromonas gingivalis GN=ispG PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.327e-24
Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  328 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGRL 558
            +F +LQ  R+R ++TEY+SCPSCGRTL++LQE  A I+  T+HL  + I IMGCIVNGPGEMADAD+GYVG  PGR+
Sbjct:  470 AFGILQATRLRMSRTEYISCPSCGRTLYNLQETVARIKAATAHLKELKIGIMGCIVNGPGEMADADYGYVGAGPGRI 546          
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTE (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlorobium tepidum GN=ispG PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.327e-24
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 1
Query:  331 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGRLP-DVGRLC 579
            FN+LQ  R+R +KTE++SCP CGRT F+L++ +A I+++ SHL G+ I IMGCIVNGPGEMADADFGYVG   GR+   VG+ C
Sbjct:  635 FNILQAARIRMSKTEFISCPGCGRTYFELEKTTALIKQRVSHLKGLKIGIMGCIVNGPGEMADADFGYVGSGKGRVSLYVGKEC 718          
BLAST of CX294065 vs. ExPASy Swiss-Prot
Match: ISPG_CHLAB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila abortus GN=ispG PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.039e-24
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 1
Query:  289 EAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPG 552
            + P      +R+ +F  LQ   +R  KTEY+SCP CGRTLFDL E++  I E+T HL G+ IA+MGCIVNGPGEMADADFG+VG   G
Sbjct:  481 DLPNIPLSTVREIAFGTLQSAGVRLVKTEYISCPGCGRTLFDLPEVTKRIHERTQHLVGLKIAVMGCIVNGPGEMADADFGFVGSKTG 568          
The following BLAST results are available for this feature:
BLAST of CX294065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
ISPG_CHLPN6.124e-2564.944-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTR1.045e-2456.574-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTB1.045e-2456.574-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTA1.045e-2456.574-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLT21.045e-2456.574-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLFF1.045e-2456.674-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PARD81.782e-2467.114-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PORGI2.327e-2463.644-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTE2.327e-2460.714-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLAB3.039e-2456.824-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionC05005E09SK FlavRip1 Citrus clementina cDNA clone C05005E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294065 ID=CX294065; Name=CX294065; organism=Citrus clementina; type=EST; length=616bp
GGATTGGTTGTATCATTACGCGGTGACGAATCCTACAAAGAGCTGGAAAT
CCTCAAAGATATTGACGCAGCAATGATTCTTCATGATTTACCCTTTAATG
AAGATAAAATTGGCAGAGTACAGGCAGCTAGGAGGCTATTTGAGTATCTA
TCAGAAAATAATCTAAACTTCCCTGTAATTCACCATATTCAGTTTCCGAA
TGGGATTCACAGGGATGACTTGGTCATTGGTGCCGGTTCCAATGTAGGAG
CCCTTTTAGTCGATGGACTTGGAGATGGTTTGCTGTTAGAAGCCCCAGGA
CAAGATTTTGATTTTCTGAGGGACACATCTTTCAACTTACTACAAGGTTG
CAGAATGAGGAATACAAAGACGGAGTATGTCTCATGTCCATCATGTGGTA
GAACTTTGTTTGACCTTCAAGAAATAAGTGCAGAGATACGAGAGAAAACA
TCGCACTTGCCCGGTGTTTCGATTGCTATCATGGGTTGCATTGTCAATGG
ACCTGGAGAGATGGCTGATGCAGACTTTGGGTATGTTGGTGGGGCTCCTG
GAAGATTGCCTGATGTCGGAAGACTGTGTGAGCGTGTATGCATGGACAGC
ACCATGCTTGTCACTA
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