CX294066

Overview
NameCX294066
Unique NameCX294066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length507
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294066_ssr60 microsatellite CX294066_ssr60:60..77. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig473 contig Ccv1_Contig473:82..588. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294066 vs. ExPASy Swiss-Prot
Match: SUMO2_DANRE (Small ubiquitin-related modifier 2 OS=Danio rerio GN=sumo2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.635e-18
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 3
Query:   93 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 350
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLTMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CX294066 vs. ExPASy Swiss-Prot
Match: SMO2B_XENLA (Small ubiquitin-related modifier 2-B OS=Xenopus laevis GN=sumo2-B PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.635e-18
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 3
Query:   93 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 353
            D KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    3 DDKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLNKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 94          
BLAST of CX294066 vs. ExPASy Swiss-Prot
Match: SUMO3_DANRE (Small ubiquitin-related modifier 3 OS=Danio rerio GN=sumo3 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.135e-18
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 3
Query:  111 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 353
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 93          
BLAST of CX294066 vs. ExPASy Swiss-Prot
Match: SMO3L_DANRE (Small ubiquitin-related modifier 3-like OS=Danio rerio GN=sumo3l PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.135e-18
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 3
Query:  111 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 353
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 93          
BLAST of CX294066 vs. ExPASy Swiss-Prot
Match: SUMO1_XENTR (Small ubiquitin-related modifier 1 OS=Xenopus tropicalis GN=sumo1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.026e-17
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 3
Query:   93 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 350
            DKK  +   +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+   QTP EL ME+ D I+    QTGG
Sbjct:   15 DKK--EGGDYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of CX294066 vs. ExPASy Swiss-Prot
Match: SMO1B_XENLA (Small ubiquitin-related modifier 1-B OS=Xenopus laevis GN=sumo1-B PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.026e-17
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 3
Query:   93 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 350
            DKK  +   +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+   QTP EL ME+ D I+    QTGG
Sbjct:   15 DKK--EGGDYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of CX294066 vs. ExPASy Swiss-Prot
Match: SUMO_CAEEL (Small ubiquitin-related modifier OS=Caenorhabditis elegans GN=smo-1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.258e-17
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 3
Query:  108 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 350
            D + +I +KV GQD NEV FR+K  T + KL  +Y DR  V +NS+ FLFDGRR+  + TP  LEMED D I+    Q GG
Sbjct:   10 DNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90          
BLAST of CX294066 vs. ExPASy Swiss-Prot
Match: SUMO4_PIG (Small ubiquitin-related modifier 4 OS=Sus scrofa GN=SUMO4 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.868e-17
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 3
Query:   93 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 350
            D+KP      + + HINLKV GQDG+   F+I+R T L KLM AYC+RQ + +  I F  DG+ +    TP +LE+ED D ID +  QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVAQFKIRRHTPLSKLMKAYCERQGLSIRQIRFRVDGQPINETHTPAQLELEDEDTIDVLQQQTGG 93          
BLAST of CX294066 vs. ExPASy Swiss-Prot
Match: SUMO1_SPETR (Small ubiquitin-related modifier 1 OS=Spermophilus tridecemlineatus GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.868e-17
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 3
Query:   90 EDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 350
            ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:   11 EDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CX294066 vs. ExPASy Swiss-Prot
Match: SUMO1_RAT (Small ubiquitin-related modifier 1 OS=Rattus norvegicus GN=Sumo1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.868e-17
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 3
Query:   90 EDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 350
            ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:   11 EDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
The following BLAST results are available for this feature:
BLAST of CX294066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO2_DANRE1.635e-1851.65Small ubiquitin-related modifier 2 OS=Danio rerio ... [more]
SMO2B_XENLA1.635e-1851.09Small ubiquitin-related modifier 2-B OS=Xenopus la... [more]
SUMO3_DANRE2.135e-1854.32Small ubiquitin-related modifier 3 OS=Danio rerio ... [more]
SMO3L_DANRE2.135e-1854.32Small ubiquitin-related modifier 3-like OS=Danio r... [more]
SUMO1_XENTR4.026e-1750.00Small ubiquitin-related modifier 1 OS=Xenopus trop... [more]
SMO1B_XENLA4.026e-1750.00Small ubiquitin-related modifier 1-B OS=Xenopus la... [more]
SUMO_CAEEL5.258e-1750.62Small ubiquitin-related modifier OS=Caenorhabditis... [more]
SUMO4_PIG6.868e-1747.25Small ubiquitin-related modifier 4 OS=Sus scrofa G... [more]
SUMO1_SPETR6.868e-1747.13Small ubiquitin-related modifier 1 OS=Spermophilus... [more]
SUMO1_RAT6.868e-1747.13Small ubiquitin-related modifier 1 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionC05005E10SK FlavRip1 Citrus clementina cDNA clone C05005E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294066 ID=CX294066; Name=CX294066; organism=Citrus clementina; type=EST; length=507bp
GGAAAGAAAGAGAGGGTAAAATTCAATTCTAACAACCTGTAAGGATGTCA
GCAACTGGTGGCGGCGGCGGCGGCGGCGGTGGTCAGGAGGAGGACAAGAA
GCCCGTCGATCAGTCGGCGCACATTAACCTCAAAGTCAAGGGCCAGGATG
GCAATGAGGTATTTTTTAGAATTAAGCGAAGCACCCAGTTGAAAAAGCTC
ATGAATGCCTACTGTGATCGGCAGTCGGTGGAGTTAAACTCTATTGCTTT
CTTGTTTGATGGGCGGAGACTCCGAGGAGAGCAGACTCCAGATGAGCTTG
AGATGGAGGATGGAGATGAAATTGATGCAATGCTGCATCAGACTGGAGGT
GCGCTTGGAAGCGGTTAGCTGCAGTTTGAAATATTTAGAGCATCGCTGGC
GGACTTGATGTTTGAGTTTTTTAAATTAGCCTATATCTATGGAAATATTA
CTGTAAATGATGACTTGGATCTATAATTAACTTGAATTAAGTCATGGTTA
TTATCAA
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