CX294066

Overview
NameCX294066
Unique NameCX294066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length507
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX294066 vs. ExPASy Swiss-Prot
Match: SUMO1_DANRE (Small ubiquitin-related modifier 1 OS=Danio rerio GN=sumo1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.209e-15
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 3 
Query:  120 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 350
            +I LKV GQD +E+ F++K +T LKKL  +Y  RQ V +NS+ FLF+G+R+    TP EL MED D I+    QTGG
Sbjct:   20 YIKLKVIGQDNSEIHFKVKMTTHLKKLKESYSQRQGVPVNSLRFLFEGQRITDNLTPKELGMEDEDVIEVYQEQTGG 96
[Close]
BLAST of CX294066 vs. ExPASy Swiss-Prot
Match: SUMO1_ONCMY (Small ubiquitin-related modifier 1 OS=Oncorhynchus mykiss GN=sumo1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.768e-15
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = 3 
Query:   87 EEDKKPVDQSA-------HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 350
            + D KP  Q         +I LKV GQD +E+ F++K +T LKKL  +Y  RQ V ++++ FLF+G+R+    TP EL MED D I+    QTGG
Sbjct:    3 DTDTKPSGQDGGDQKDGEYIKLKVIGQDNSEIHFKVKMTTHLKKLKESYSQRQGVHMSTLRFLFEGQRISDNHTPKELGMEDEDVIEVYQEQTGG 97
The following BLAST results are available for this feature:
BLAST of CX294066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO1_DANRE2.209e-1550.65Small ubiquitin-related modifier 1 OS=Danio rerio ... [more]
SUMO1_ONCMY3.768e-1543.16Small ubiquitin-related modifier 1 OS=Oncorhynchus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05005E10SK FlavRip1 Citrus clementina cDNA clone C05005E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294066 ID=CX294066; Name=CX294066; organism=Citrus clementina; type=EST; length=507bp
GGAAAGAAAGAGAGGGTAAAATTCAATTCTAACAACCTGTAAGGATGTCA
GCAACTGGTGGCGGCGGCGGCGGCGGCGGTGGTCAGGAGGAGGACAAGAA
GCCCGTCGATCAGTCGGCGCACATTAACCTCAAAGTCAAGGGCCAGGATG
GCAATGAGGTATTTTTTAGAATTAAGCGAAGCACCCAGTTGAAAAAGCTC
ATGAATGCCTACTGTGATCGGCAGTCGGTGGAGTTAAACTCTATTGCTTT
CTTGTTTGATGGGCGGAGACTCCGAGGAGAGCAGACTCCAGATGAGCTTG
AGATGGAGGATGGAGATGAAATTGATGCAATGCTGCATCAGACTGGAGGT
GCGCTTGGAAGCGGTTAGCTGCAGTTTGAAATATTTAGAGCATCGCTGGC
GGACTTGATGTTTGAGTTTTTTAAATTAGCCTATATCTATGGAAATATTA
CTGTAAATGATGACTTGGATCTATAATTAACTTGAATTAAGTCATGGTTA
TTATCAA
back to top