CX294080

Overview
NameCX294080
Unique NameCX294080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_DICDI (Eukaryotic translation initiation factor 3 subunit F OS=Dictyostelium discoideum GN=eif3f PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.098e-29
Identity = 73/164 (44.51%), Postives = 105/164 (64.02%), Query Frame = 3
Query:   69 LQFGPSSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDTGFRNGEGTVKAYVSVNLSLG-DRQLAAQFQKILL 551
            +Q   S  + S +T KVHP+VIFNI D Y+RR    +RVIGTLLG    DG ++IRN + V H+E ++Q+A+++EY   ML  HLK +P+E I+GW++TG  +   S  I+ FY  E+ N  P+HLTVDTG  N    + AY++ NLSL  +  L + F ++ L
Sbjct:    1 MQKETSIFLPSQVTVKVHPVVIFNILDHYIRRNVGQDRVIGTLLG-FNNDGVLEIRNCFPVVHSE-TEQIAVEMEYQRKMLDLHLKSSPREPIIGWYATGNDINENSVHINNFYRDEMGNSTPIHLTVDTGLTNDTMGIHAYMAHNLSLNPESSLGSYFSQLPL 162          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_BOMMO (Eukaryotic translation initiation factor 3 subunit F OS=Bombyx mori GN=eIF3-S5 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.937e-27
Identity = 62/148 (41.89%), Postives = 90/148 (60.81%), Query Frame = 3
Query:  102 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQKI 545
            NI+ KVHP+V+F I D Y RR   + RVIGTL G+    G V++ N + VPH E +DQV  ++ Y   + + + +VN  E IVGW++TG  VT  S++IHE+Y RE   PVH+T+DT    G   ++AYV V L + + +    F  +
Sbjct:    4 NISVKVHPVVLFQIVDAYERRNADSHRVIGTLWGTS-DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQGCMFTPV 150          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_MALGO (Eukaryotic translation initiation factor 3 subunit F OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=MGL_1945 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.998e-25
Identity = 72/168 (42.86%), Postives = 101/168 (60.12%), Query Frame = 3
Query:   33 KKIRMAASDRTVLQFGPSSAV---TSNITA-KVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP--NPVHLTVDTGF---RNGEGTVKAYVSVNL 503
            +K  +AAS    L F P+++    + +ITA KVHP+ +F+I D Y+RR     RVIGTLLG+   +  V++RN++ VPH E  D  Q+ LD E+H  ML  HL+V P EV++GW+ST   +   SALI + Y RE      +HLT++T      NG G V+ YVS  L
Sbjct:    3 EKSTLAASSALHLSFPPAASGVFHSRSITAVKVHPVALFSILDHYLRRDVSQPRVIGTLLGT-RSESEVEVRNAFAVPHGESQDPWQIHLDAEHHRRMLDLHLRVRPDEVVLGWYSTNTELNSNSALIQDHYSRETAPHQAIHLTLNTNVADEANGLG-VQCYVSALL 168          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_PHANO (Eukaryotic translation initiation factor 3 subunit F OS=Phaeosphaeria nodorum GN=SNOG_04858 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.508e-23
Identity = 58/125 (46.40%), Postives = 81/125 (64.80%), Query Frame = 3
Query:   96 TSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDT 452
            T+ +   + P  +F+I D  +RRP   ERVIGTLLG+   DGT ++IRN Y VPH E ++QV +D++Y   ML  HL+ NP+EV+VGW++T   +   SALI  FY ++     P+P VHLTV T
Sbjct:   25 TAPLNVAIQPQAVFSILDHSLRRPADQERVIGTLLGTRSEDGTEIEIRNCYAVPHTETAEQVEVDMDYQKQMLALHLRANPREVLVGWYATSSDLNTFSALIQNFYSQQGDGTWPHPAVHLTVST 149          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_SCHPO (Eukaryotic translation initiation factor 3 subunit F OS=Schizosaccharomyces pombe GN=eif3f PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.573e-23
Identity = 64/170 (37.65%), Postives = 96/170 (56.47%), Query Frame = 3
Query:   45 MAASDRTVLQFGPSSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV----------PNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDR 518
            MA   + VL     S+ +S +   + P V+F+I D   R+ +  +RVIGTLLG+   DG  ++I++ + VPHNE S+QV +++EYH  M   HLK NP+EV+VGW++T   +   SALI   Y              P+P VHLTV+T   +    +K YVS  + + +R
Sbjct:    1 MALGTKHVLHLTKPSSRSSPLNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVEVEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPAEPGTAPLGTYPHPCVHLTVNTDV-SSPLAIKTYVSSPVGITER 169          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPOR (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus oryzae GN=AO090005001590 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.777e-23
Identity = 60/129 (46.51%), Postives = 81/129 (62.79%), Query Frame = 3
Query:   84 SSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDT 452
            S+  T+ +   +HP  +F+I D  +RR    ERVIGTLLG+   DGT V+IR ++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T
Sbjct:   21 SAPTTAPLNVVIHPQALFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRTTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTFPHPAVHLTVST 149          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPCL (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus clavatus GN=ACLA_026150 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.852e-22
Identity = 64/143 (44.76%), Postives = 87/143 (60.84%), Query Frame = 3
Query:   84 SSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVS 494
            S+  T+ +   + P  IF+I D  +RR    ERVIGTLLG+   DGT V+IR+++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T       T +AY+S
Sbjct:   21 SAPTTAPLNVVIQPQAIFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVSTEAGKDIET-RAYIS 162          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_NEOFI (Eukaryotic translation initiation factor 3 subunit F OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_016300 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.337e-22
Identity = 60/129 (46.51%), Postives = 81/129 (62.79%), Query Frame = 3
Query:   84 SSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDT 452
            S+  T+ +   + P  IF+I D  +RR    ERVIGTLLG+   DGT V+IR+++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T
Sbjct:   21 SAPTTAPLNVVIQPQAIFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVST 149          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPTN (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_08559 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.337e-22
Identity = 59/129 (45.74%), Postives = 81/129 (62.79%), Query Frame = 3
Query:   84 SSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDT 452
            S+  T+ +   + P  +F+I D  +RR    ERVIGTLLG+   DGT V+IR+++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T
Sbjct:   21 SAPTTAPLNVVIQPQALFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTFPHPAVHLTVST 149          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPFU (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus fumigatus GN=AFUA_1G09330 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.337e-22
Identity = 60/129 (46.51%), Postives = 81/129 (62.79%), Query Frame = 3
Query:   84 SSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDT 452
            S+  T+ +   + P  IF+I D  +RR    ERVIGTLLG+   DGT V+IR+++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T
Sbjct:   21 SAPTTAPLNVVIQPQAIFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVST 149          
The following BLAST results are available for this feature:
BLAST of CX294080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EIF3F_DICDI4.098e-2944.51Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_BOMMO2.937e-2741.89Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MALGO7.998e-2542.86Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_PHANO1.508e-2346.40Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_SCHPO2.573e-2337.65Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPOR9.777e-2346.51Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPCL4.852e-2244.76Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_NEOFI6.337e-2246.51Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPTN6.337e-2245.74Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPFU6.337e-2246.51Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC05005G04SK FlavRip1 Citrus clementina cDNA clone C05005G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294080 ID=CX294080; Name=CX294080; organism=Citrus clementina; type=EST; length=619bp
CCTCTTTGCTTTTTGAGTCGAGATCAGAAGAGAAGAAGATAAGAATGGCG
GCAAGCGACCGCACGGTGCTGCAATTCGGACCTTCATCAGCGGTGACGTC
GAATATAACGGCGAAAGTTCACCCGCTGGTTATTTTCAACATCTCCGACT
GTTACGTCAGACGCCCCGACCAAGCTGAACGCGTCATCGGCACGCTTCTT
GGCTCCGTTTTGCCTGATGGCACCGTCGATATCCGTAACTCCTACGTCGT
TCCTCACAACGAGTTCTCCGATCAGGTTGCATTGGATATTGAATACCATC
ATACCATGTTAAAGTCACACCTAAAGGTGAATCCTCAGGAAGTGATTGTT
GGATGGTTTTCTACAGGGTTGGGAGTCACTGGTGGCAGTGCCTTGATCCA
TGAATTCTATTGTCGCGAAGTTCCTAATCCTGTCCACCTGACTGTAGATA
CAGGATTCAGAAATGGAGAGGGTACTGTAAAAGCTTATGTTTCTGTCAAT
TTGTCTCTTGGAGATCGACAGCTTGCTGCACAATTTCAGAAAATCCTCTT
GATCTTCGATGATTGAAGCTGAGCGAGTTGGATTCATATCTGAGTCACAT
CGGTGACAACTCCTAGTGA
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