CX294081

Overview
NameCX294081
Unique NameCX294081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 2.550e-77
Identity = 138/154 (89.61%), Postives = 150/154 (97.40%), Query Frame = 3
Query:   63 MSDEEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSDEEH F+SKADAGASKTYPQQAGTIRK+GYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD++LL+Q+KDGFAEGKDLV++VMS+MGEEQI AL+
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALK 154          
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 2.550e-77
Identity = 139/154 (90.26%), Postives = 148/154 (96.10%), Query Frame = 3
Query:   63 MSDEEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSDEEH F+SKADAGASKTYPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTDE LL+ +KDGFAEGKDLV++VMS+MGEEQI AL+
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALK 154          
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A1_MEDSA (Eukaryotic translation initiation factor 5A-1 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 3.330e-77
Identity = 138/155 (89.03%), Postives = 151/155 (97.42%), Query Frame = 3
Query:   63 MSDEEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDI-VPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSDEEH F+SKADAGASKTYPQQAGTIRKNGYIVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLE++ VPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDL+LPTD++LLTQ+KDGFAEGKDLV++VMS+MGEEQICAL+
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEEVYVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALK 155          
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 4.350e-77
Identity = 137/154 (88.96%), Postives = 148/154 (96.10%), Query Frame = 3
Query:   63 MSDEEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSDEEH F+SKADAGASKTYPQQAGTIRK G+IVIK+R CKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDL+LPTD+ LLTQ+KDGF EGKDLV++VMS+MGEEQICAL+
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKGGHIVIKNRACKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALK 154          
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 4.350e-77
Identity = 138/154 (89.61%), Postives = 148/154 (96.10%), Query Frame = 3
Query:   63 MSDEEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSDEEHHF+SKADAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDE LL Q+KDGF EGKDLV++VMS+MGEEQI A++
Sbjct:    1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDENLLKQVKDGFQEGKDLVVSVMSAMGEEQINAVK 154          
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A_MAIZE (Eukaryotic translation initiation factor 5A OS=Zea mays GN=TIF5A PE=1 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 1.399e-75
Identity = 134/155 (86.45%), Postives = 148/155 (95.48%), Query Frame = 3
Query:   63 MSD-EEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSD EEHHF+SKADAGASKTYPQQAGT+RKNG+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCD+PHVNRT+YQLIDISEDGFVSLLT +GNTKDDLRLPTDETL+ Q+K+GF  GKDLV+TV S+MGEEQICAL+
Sbjct:    1 MSDSEEHHFESKADAGASKTYPQQAGTVRKNGFIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDIPHVNRTEYQLIDISEDGFVSLLTSDGNTKDDLRLPTDETLVAQIKEGFESGKDLVVTVQSAMGEEQICALK 155          
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A3_ARATH (Eukaryotic translation initiation factor 5A-3 OS=Arabidopsis thaliana GN=At1g69410 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.109e-72
Identity = 130/154 (84.42%), Postives = 145/154 (94.16%), Query Frame = 3
Query:   63 MSDEEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSD+EHHF+S +DAGASKTYPQQAG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLEDIVPSSHNCDVPHVNR DYQLIDISEDGFVSLLT+NG+TKDDL+LPTDE LLTQLK+GF EGKD+V++VMS+MGEEQ+CAL+
Sbjct:    1 MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALK 153          
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A1_ARATH (Eukaryotic translation initiation factor 5A-1 OS=Arabidopsis thaliana GN=At1g13950 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 1.448e-72
Identity = 131/154 (85.06%), Postives = 146/154 (94.81%), Query Frame = 3
Query:   63 MSDEEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSDEEHHF+S +DAGASKTYPQQAGTIRKNGYIVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG+VSLLT+NG+TKDDL+LP D+TLL Q+K GF +GKDLV++VMS+MGEEQI AL+
Sbjct:    1 MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALK 153          
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A_DIACA (Eukaryotic translation initiation factor 5A OS=Dianthus caryophyllus PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 7.186e-72
Identity = 124/154 (80.52%), Postives = 145/154 (94.16%), Query Frame = 3
Query:   63 MSDEEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSD++HHF+S ADAGASKTYPQQAGTIRK+G+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNR DYQL+DI+EDGFVSLLT++G+TKDDL+LP DE L+ Q+K+GF  GKDL+L+VM +MGEEQICA++
Sbjct:    1 MSDDDHHFESSADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRVDYQLLDITEDGFVSLLTDSGDTKDDLKLPADEALVKQMKEGFEAGKDLILSVMCAMGEEQICAVK 154          
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A2_ARATH (Eukaryotic translation initiation factor 5A-2 OS=Arabidopsis thaliana GN=At1g26630 PE=1 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 2.392e-67
Identity = 120/154 (77.92%), Postives = 141/154 (91.56%), Query Frame = 3
Query:   63 MSDEEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSD+EHHF++ +++GASKTYPQ AG IRK G+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGFVSLLT++G TKDDL+LPTD+ L  Q++ GF EGKD+V++VMSSMGEEQICA++
Sbjct:    1 MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVK 153          
The following BLAST results are available for this feature:
BLAST of CX294081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
IF5A4_SOLTU2.550e-7789.61Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A3_SOLLC2.550e-7790.26Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A1_MEDSA3.330e-7789.03Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A_SENVE4.350e-7788.96Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A2_SOLLC4.350e-7789.61Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A_MAIZE1.399e-7586.45Eukaryotic translation initiation factor 5A OS=Zea... [more]
IF5A3_ARATH1.109e-7284.42Eukaryotic translation initiation factor 5A-3 OS=A... [more]
IF5A1_ARATH1.448e-7285.06Eukaryotic translation initiation factor 5A-1 OS=A... [more]
IF5A_DIACA7.186e-7280.52Eukaryotic translation initiation factor 5A OS=Dia... [more]
IF5A2_ARATH2.392e-6777.92Eukaryotic translation initiation factor 5A-2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC05005G06SK FlavRip1 Citrus clementina cDNA clone C05005G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294081 ID=CX294081; Name=CX294081; organism=Citrus clementina; type=EST; length=560bp
GAGCTATCTCAAAATCTCGCTCAGTAAATCGGCCGAGTCGGAATCAGTCA
GTGCTTAAAGCGATGTCGGACGAGGAGCATCACTTCAAGTCAAAGGCCGA
TGCCGGAGCCTCCAAGACTTACCCACAGCAAGCTGGTACCATCCGTAAGA
ACGGCTACATCGTCATCAAAAGCCGTCCCTGCAAGGTTGTGGAAGTCTCC
ACCTCCAAGACTGGAAAGCACGGTCATGCTAAGTGCCACTTTGTTGGAAT
TGATATCTTCAGTGGAAAGAAGCTGGAAGATATTGTCCCCTCTTCTCATA
ACTGTGATGTTCCCCATGTCAACCGTACCGACTATCAGTTGATTGATATT
TCTGAGGATGGATTTGTGAGTTTGCTGACTGAAAATGGGAACACCAAGGA
TGATCTGAGGCTCCCAACCGATGAGACTCTGCTGACCCAGCTCAAGGACG
GTTTTGCTGAGGGGAAGGACTTGGTTTTGACTGTCATGTCTTCAATGGGC
GAGGAGCAGATCTGTGCCCTCAGGATATTGGCCCAAGTCGTAGTTGCGCG
AATGTGATTA
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