CX294081

Overview
NameCX294081
Unique NameCX294081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A2_CAEEL (Eukaryotic translation initiation factor 5A-2 OS=Caenorhabditis elegans GN=iff-2 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.354e-36
Identity = 82/160 (51.25%), Postives = 113/160 (70.62%), Query Frame = 3
Query:   63 MSDEEH---HFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLT-VMSSMGEEQICALRI 527
            MSD+ H   HF +  D+GA+ T+P+Q   +RKN +++IK RPCK+VE+STSKTGKHGHAK H V IDIF+ KKLEDI PS+HN DVP V R +Y L+ I +DG+ SL+  E+   KDDL+LP D  L  Q++D + + +  VL  V+S++GEE I   ++
Sbjct:    1 MSDDHHDDEHFHT-GDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLP-DTELGQQIRDAYEKDEGSVLVQVVSAIGEEAILGWKV 157          
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A_DICDI (Eukaryotic translation initiation factor 5A OS=Dictyostelium discoideum GN=eif5a PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 8.299e-36
Identity = 69/146 (47.26%), Postives = 110/146 (75.34%), Query Frame = 3
Query:   90 SKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALRI 527
            ++A +GAS T+P Q   +RKNG++VIK  PCK+V++STSKTGKHGHAK +   IDIF+GKK E+I PS+HN DVP+V+R +Y ++D+ +DG++SLL   G  K+DL LP D+ +  ++     EGK+ +++V+S++G+E + ++++
Sbjct:   13 AQAGSGASLTFPIQCSALRKNGFVVIKGFPCKIVDMSTSKTGKHGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDV-QDGYLSLLDAGGEVKEDLALPEDD-IGKEITQMLKEGKEPLVSVISALGKEGVVSVKV 156          
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A1_CAEEL (Eukaryotic translation initiation factor 5A-1 OS=Caenorhabditis elegans GN=iff-1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.855e-33
Identity = 76/157 (48.41%), Postives = 109/157 (69.43%), Query Frame = 3
Query:   72 EEHHFKSK---ADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLT-VMSSMGEEQICALRI 527
            E+HH + +   A++GA+ T+P+Q   +RKN +++I+ RPCK+VE+STSKTGKHGHAK H V IDIF+ KKLEDI PS+HN DVP V R +Y L+ I EDGF SL+  E+   KDDL++P  + L   +++   + +  VL  V+++ GEE I   +I
Sbjct:    3 EDHHDEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGD-LGNTIREALEKDEGSVLVQVVAACGEEAILGYKI 157          
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A_THEPD (Translation initiation factor 5A OS=Thermofilum pendens (strain Hrk 5) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.627e-15
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 3
Query:  117 TYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            T P++AG I+   +IVI   PCKVVEV  SKTGKHG AK   VGI  F G K   +VP+    +VP + +   Q++    D  V L+     +  ++ +P +E + ++L +G      + + V   MG  +I  +R
Sbjct:    3 TRPEEAGNIKVGSFIVIDGEPCKVVEVEKSKTGKHGSAKARIVGIGFFDGGKRSIVVPTDARVEVPIIKKFTAQVVAFVGDN-VQLMNLEDYSTFEIPMPQEEEIKSKLSEG------VEVEVWEVMGRHKIMRVR 131          
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A_SCHMA (Eukaryotic translation initiation factor 5A (Fragment) OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.523e-13
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 3
Query:   99 DAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVG 248
            D GASKT P+Q   +RK G++V+K RPCK+VE+STSKTGKHG AK H VG
Sbjct:    3 DFGASKTLPKQCSALRKGGHVVMKDRPCKIVEMSTSKTGKHGSAKVHLVG 52          
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: YE034_YEAST (Putative uncharacterized protein YEL034C-A OS=Saccharomyces cerevisiae GN=YEL034C-A PE=5 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 7.558e-13
Identity = 46/126 (36.51%), Postives = 68/126 (53.97%), Query Frame = -1
Query:  144 EGTDLLLAH*RHDSQNQVLPLSKTVLELGQQSLIGWEPQIILGVPIFSQQTHKSILRNINQLIVGTVDMGNITVMRRGDNIFQLLSTEDINSNKVALSMTVLSSLGGGDFHNLAGTAFDDDVAVLT 521
            EG      H   D  +QVL   K+ L+   Q    W   IIL V +   Q  ++++ N+ QL+  ++D  N  V+ R   IFQLL++EDIN N++  S+TVL+SL  G   NL  +  DD+  VL+
Sbjct:   31 EGDGGFFTHSGDDGNHQVLTFIKSSLQTVTQFTF-WSLDIILSVTVHVHQRQETVI-NVQQLVFVSLDNWNFHVVSRWRQIFQLLTSEDINGNQMDFSVTVLTSLRSGHVDNLTWSTLDDNETVLS 154          
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A_IGNH4 (Translation initiation factor 5A OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.684e-12
Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = 3
Query:  111 SKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 452
            SKTY    G ++   +I+I   PCK+VE+S +KTGKHG AK H V I + SG K   + P     +VP + +   Q++ I+ D  V L+        ++ LP +E L ++L+ G
Sbjct:    2 SKTYAT-LGELKPGNFIMIDGEPCKIVEMSKAKTGKHGSAKAHVVAISLISGAKKTFVAPVDTRVEVPIIEKRVGQVLAITGDS-VQLMDMETYDTFEVPLPEEEELKSRLEPG 113          
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A_CALMQ (Translation initiation factor 5A OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 3
Query:  117 TYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISED 359
            T    AG I++  YI+I + PC+VVEV  SKTGKHG AK   VGI +  G K   +VP+    +VP + +   Q+I IS D
Sbjct:    3 TRTASAGDIKEGSYIMIDNMPCRVVEVEKSKTGKHGSAKARIVGIGVIDGVKRTIVVPTDAAVEVPVIEKFTAQVISISGD 83          
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A_SULTO (Translation initiation factor 5A OS=Sulfolobus tokodaii GN=eif5a PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.899e-12
Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 3
Query:  135 GTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 452
            G ++   Y+VI   PC+VVE+S +KTGKHG AK + V I +F+G+K   + P     +VP + +   Q++    D    +  EN  T  D+  PTD  ++ +++ G
Sbjct:    9 GDLKVGNYVVIDGEPCRVVEISKAKTGKHGSAKANIVAIGLFTGQKRTLMAPVDQQVEVPIIEKHIGQILADKGDTITIMDMENYET-FDIEKPTDADIVDKIRPG 113          
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A_STAMF (Translation initiation factor 5A OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.899e-12
Identity = 41/114 (35.96%), Postives = 61/114 (53.51%), Query Frame = 3
Query:  111 SKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 452
            SKTY    G ++   +I+I   PC++VE+S +KTGKHG AK H V I +F+G K   + P     +VP + +   Q+I    D    +  E   T  ++  P+DE L  +LK G
Sbjct:    2 SKTYAT-LGELKPGNFIIIDGEPCRIVEMSKAKTGKHGSAKAHVVAIGLFTGNKKTLVAPVDQRVEVPVIEKRVGQIIADMGDLLQVMDMETFET-FEVEKPSDEKLREKLKPG 113          
The following BLAST results are available for this feature:
BLAST of CX294081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
IF5A2_CAEEL6.354e-3651.25Eukaryotic translation initiation factor 5A-2 OS=C... [more]
IF5A_DICDI8.299e-3647.26Eukaryotic translation initiation factor 5A OS=Dic... [more]
IF5A1_CAEEL3.855e-3348.41Eukaryotic translation initiation factor 5A-1 OS=C... [more]
IF5A_THEPD1.627e-1534.56Translation initiation factor 5A OS=Thermofilum pe... [more]
IF5A_SCHMA1.523e-1366.00Eukaryotic translation initiation factor 5A (Fragm... [more]
YE034_YEAST7.558e-1336.51Putative uncharacterized protein YEL034C-A OS=Sacc... [more]
IF5A_IGNH41.684e-1235.96Translation initiation factor 5A OS=Ignicoccus hos... [more]
IF5A_CALMQ2.872e-1244.44Translation initiation factor 5A OS=Caldivirga maq... [more]
IF5A_SULTO4.899e-1233.96Translation initiation factor 5A OS=Sulfolobus tok... [more]
IF5A_STAMF4.899e-1235.96Translation initiation factor 5A OS=Staphylothermu... [more]

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Properties
Property NameValue
Genbank descriptionC05005G06SK FlavRip1 Citrus clementina cDNA clone C05005G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294081 ID=CX294081; Name=CX294081; organism=Citrus clementina; type=EST; length=560bp
GAGCTATCTCAAAATCTCGCTCAGTAAATCGGCCGAGTCGGAATCAGTCA
GTGCTTAAAGCGATGTCGGACGAGGAGCATCACTTCAAGTCAAAGGCCGA
TGCCGGAGCCTCCAAGACTTACCCACAGCAAGCTGGTACCATCCGTAAGA
ACGGCTACATCGTCATCAAAAGCCGTCCCTGCAAGGTTGTGGAAGTCTCC
ACCTCCAAGACTGGAAAGCACGGTCATGCTAAGTGCCACTTTGTTGGAAT
TGATATCTTCAGTGGAAAGAAGCTGGAAGATATTGTCCCCTCTTCTCATA
ACTGTGATGTTCCCCATGTCAACCGTACCGACTATCAGTTGATTGATATT
TCTGAGGATGGATTTGTGAGTTTGCTGACTGAAAATGGGAACACCAAGGA
TGATCTGAGGCTCCCAACCGATGAGACTCTGCTGACCCAGCTCAAGGACG
GTTTTGCTGAGGGGAAGGACTTGGTTTTGACTGTCATGTCTTCAATGGGC
GAGGAGCAGATCTGTGCCCTCAGGATATTGGCCCAAGTCGTAGTTGCGCG
AATGTGATTA
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