CX294110

Overview
NameCX294110
Unique NameCX294110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_CALS8 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY++LF+M+ V+L F ++AL  IA KA  +NTGARGLRAI+E I+ + M+EIP
Sbjct:  329 LVKQYQKLFAMDGVELEFEKEALEAIADKAIERNTGARGLRAIMEEIMLDVMFEIP 384          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_YERPS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pseudotuberculosis GN=clpX PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.765e-11
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 174
            L KQY+ LFS+  V+L F ++AL  IAKKA A+ TGARGLR+I+E +L + MY++P +
Sbjct:  333 LTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGVLLDTMYDLPSM 390          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_VIBSL (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio splendidus (strain LGP32) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.765e-11
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY  LF + + +L F E ALR IAKKA  + TGARGLR+ILE +L E MYE+P
Sbjct:  335 LTKQYAALFELEDTELEFREDALRAIAKKAMNRKTGARGLRSILEGVLLETMYELP 390          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_SHEAM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.765e-11
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY  LF M NV+L F E AL+ IA+KA ++ TGARGLR+I+E IL + MY++P
Sbjct:  333 LTKQYAALFEMENVELEFREDALKAIAQKAMSRKTGARGLRSIVEGILLDTMYDLP 388          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_RHILW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.765e-11
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            KQY+RLF M +V+L F E ALR IA+KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  335 KQYQRLFEMEDVELTFHEDALREIARKAIVRKTGARGLRSIMEKILLDTMFELPTLE 391          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_RHILO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium loti GN=clpX PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.765e-11
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY+RLF M NV L F E AL  IAK+A  + TGARGLR+I+E+IL + M+E+P
Sbjct:  332 LVKQYQRLFEMENVDLTFHENALSAIAKRAIERKTGARGLRSIMEAILLDTMFELP 387          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_RHIEC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.765e-11
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            KQY+RLF M +V+L F E ALR IA+KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  335 KQYQRLFEMEDVELTFHEDALREIARKAIVRKTGARGLRSIMEKILLDTMFELPTLE 391          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_RHIE6 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium etli (strain CIAT 652) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.765e-11
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            KQY+RLF M +V+L F E ALR IA+KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  335 KQYQRLFEMEDVELTFHEDALREIARKAIVRKTGARGLRSIMEKILLDTMFELPTLE 391          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_PARDP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Paracoccus denitrificans (strain Pd 1222) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.765e-11
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY+RLF + +VKL FTE AL  IAK+A  + TGARGLR+I+E IL + M+++P
Sbjct:  329 LVKQYQRLFDLESVKLTFTEDALTAIAKRAIKRKTGARGLRSIMEDILLDTMFDLP 384          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_NEIMF (ATP-dependent Clp protease ATP-binding subunit clpX OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.765e-11
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+ LF M NV+L F E ALR IA++A  + TGARGLR+I+E  L + MY +PD+K
Sbjct:  332 LVKQYQALFGMENVELEFEEGALRSIARQAMERKTGARGLRSIVERCLLDTMYRLPDLK 390          
The following BLAST results are available for this feature:
BLAST of CX294110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CLPX_CALS82.883e-1157.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_YERPS3.765e-1153.45ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VIBSL3.765e-1158.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEAM3.765e-1157.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHILW3.765e-1156.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHILO3.765e-1158.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHIEC3.765e-1156.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHIE63.765e-1156.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PARDP3.765e-1157.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NEIMF3.765e-1155.93ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC05011B12SK AbsAOv1 Citrus clementina cDNA clone C05011B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294110 ID=CX294110; Name=CX294110; organism=Citrus clementina; type=EST; length=538bp
CTGGGTAAGCAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACA
TTTTACTGAAAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGA
ATACTGGTGCCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAA
GCCATGTATGAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGC
TGTTGTGGTAGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCG
GAGGGAAAATTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAA
GCCGAGCGGAAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGA
GAGTGAAGCAGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGC
ACCACGATGATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTA
GAAATCATATTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGT
TCTTGAATTCGTTGGAAAGGAATAAGGAAAATATCATA
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