CX294110

Overview
NameCX294110
Unique NameCX294110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_DICTD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.423e-11
Identity = 30/58 (51.72%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 174
            L KQYK L SM  V+++FT++AL+ I K+A  K TGARGLRA++E ++ + MYE+P++
Sbjct:  326 LVKQYKALLSMEGVEINFTDEALKAIVKEAIDKATGARGLRAVMEELMLDLMYELPNL 383          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_CLOTH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.423e-11
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY++LF M++V L F ++A+  IA KA  +NTGARGLRAILE I+ + MY+IP
Sbjct:  328 LVKQYQKLFEMDDVILEFEKEAIEAIADKAIERNTGARGLRAILEEIMLDVMYDIP 383          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_CHRVO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Chromobacterium violaceum GN=clpX PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.423e-11
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            KQY++LFS+  V+L     ALRVIAK+A A+ TGARGLR+ILE  L + MYE+P ++
Sbjct:  338 KQYQKLFSLETVELEVRPSALRVIAKQALARKTGARGLRSILERALLDTMYELPSMQ 394          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_BDEBA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bdellovibrio bacteriovorus GN=clpX PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.423e-11
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            KQY++LFS   V+L FTEKALR +A+ A  + TGARGLR +LE+ + + MY+IP
Sbjct:  334 KQYQKLFSFEGVELKFTEKALRAVAQMALKRKTGARGLRGVLETAMLDVMYDIP 387          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_AZOBR (ATP-dependent Clp protease ATP-binding subunit clpX OS=Azospirillum brasilense GN=clpX PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.423e-11
Identity = 31/56 (55.36%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY+RLF M +V+L F++ ALR I+ KA  + TGARGLR+I+ESIL + M+++P
Sbjct:  330 LVKQYQRLFEMEDVRLEFSDDALRTISHKAIQRKTGARGLRSIMESILLDPMFDLP 385          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_AGRT5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpX PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.423e-11
Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M +V+L F E ALR IA++A  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  333 LVKQYQRLFEMEDVELTFHEDALREIARRAITRKTGARGLRSIMEKILLDTMFELPTLE 391          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_RHORT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=clpX PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.388e-11
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M + +L F E ALR IA KA A+ TGARGLR+I+E IL + M+++P ++
Sbjct:  330 LVKQYQRLFEMESTQLSFKEDALRCIALKAIARKTGARGLRSIMEGILLDTMFDLPGME 388          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_MYXXA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Myxococcus xanthus GN=clpX PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.388e-11
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 180
            L KQY++LF ++ V L FT+ AL+ IA +A  +  GARGLR+ILES + + MYEIP  KT
Sbjct:  332 LTKQYRKLFELDGVTLKFTDGALKAIANEAIRRKAGARGLRSILESAMLDVMYEIPSRKT 391          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_MAGSA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=clpX PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.388e-11
Identity = 30/56 (53.57%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY+RLF M + +L F++ AL+ IA+KA A+ TGARGLR+I+E+IL + M+++P
Sbjct:  330 LVKQYQRLFEMEDTRLAFSDDALKAIAEKAIARKTGARGLRSIMETILLDTMFDLP 385          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_FRATT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Francisella tularensis subsp. tularensis GN=clpX PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.388e-11
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            KQY +LF  +NV + FT++AL  IAKKA  K TGARGLR ILE++L E M+ IP
Sbjct:  327 KQYIKLFKFDNVNIEFTDQALVEIAKKAITKKTGARGLRTILENVLLEVMFHIP 380          
The following BLAST results are available for this feature:
BLAST of CX294110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CLPX_DICTD6.423e-1151.72ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOTH6.423e-1157.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CHRVO6.423e-1156.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BDEBA6.423e-1155.56ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_AZOBR6.423e-1155.36ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_AGRT56.423e-1154.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHORT8.388e-1154.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MYXXA8.388e-1153.33ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MAGSA8.388e-1153.57ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_FRATT8.388e-1159.26ATP-dependent Clp protease ATP-binding subunit clp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05011B12SK AbsAOv1 Citrus clementina cDNA clone C05011B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294110 ID=CX294110; Name=CX294110; organism=Citrus clementina; type=EST; length=538bp
CTGGGTAAGCAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACA
TTTTACTGAAAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGA
ATACTGGTGCCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAA
GCCATGTATGAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGC
TGTTGTGGTAGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCG
GAGGGAAAATTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAA
GCCGAGCGGAAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGA
GAGTGAAGCAGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGC
ACCACGATGATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTA
GAAATCATATTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGT
TCTTGAATTCGTTGGAAAGGAATAAGGAAAATATCATA
back to top