CX294110

Overview
NameCX294110
Unique NameCX294110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_METEP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylobacterium extorquens (strain PA1) GN=clpX PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.587e-12
Identity = 32/60 (53.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 180
            L KQY+RLF M NV+L F ++AL ++A+KA  + TGARGLR+ILE+IL + MY++P +++
Sbjct:  330 LVKQYQRLFEMENVELTFQDEALSLVARKAIERKTGARGLRSILETILLDTMYDLPGLES 389          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_METC4 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=clpX PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.587e-12
Identity = 32/60 (53.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVKT 180
            L KQY+RLF M NV+L F ++AL ++A+KA  + TGARGLR+ILE+IL + MY++P +++
Sbjct:  330 LVKQYQRLFEMENVELTFQDEALSLVARKAIERKTGARGLRSILETILLDTMYDLPGLES 389          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_CAUSK (ATP-dependent Clp protease ATP-binding subunit clpX OS=Caulobacter sp. (strain K31) GN=clpX PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.587e-12
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 171
            KQY+RLF M N+ L FTE AL  +AKKA  + TGARGLR+I+E IL E M+E+P+
Sbjct:  332 KQYQRLFEMENIGLTFTEDALHGVAKKAILRKTGARGLRSIMEGILLETMFELPN 386          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_BAUCH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=clpX PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.587e-12
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY+ LF++  V+L F+E+AL  IAKKA A+ TGARGLR+I+E IL E MYE+P
Sbjct:  333 LTKQYQALFNLEGVELEFSEEALIAIAKKAMARKTGARGLRSIVEGILLETMYELP 388          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_ACICJ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acidiphilium cryptum (strain JF-5) GN=clpX PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.587e-12
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY RLF M  VKL+FTE AL+V+A +A  + TGARGLR+I+E+IL E M+++P
Sbjct:  329 LVKQYGRLFEMEGVKLNFTEDALKVVAARAIQRKTGARGLRSIMENILLETMFDLP 384          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_VIBHB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY  LF + + +L F E ALR IAKKA  + TGARGLR+ILES+L E MYE+P
Sbjct:  335 LTKQYAALFELEDAELEFREDALRAIAKKAMERKTGARGLRSILESVLLETMYELP 390          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_RHOPS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodopseudomonas palustris (strain BisB5) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M N++L F ++AL  +A+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  330 LVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_RHOPB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodopseudomonas palustris (strain BisB18) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M N++L F ++AL  +A+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  330 LVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_RHOP5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodopseudomonas palustris (strain BisA53) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M N++L F ++AL  +A+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  330 LVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_RHOP2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodopseudomonas palustris (strain HaA2) GN=clpX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M N++L F ++AL  +A+KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  330 LVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILESILLETMFDLPGLE 388          
The following BLAST results are available for this feature:
BLAST of CX294110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CLPX_METEP7.587e-1253.33ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METC47.587e-1253.33ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CAUSK7.587e-1260.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BAUCH7.587e-1260.71ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACICJ7.587e-1258.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_VIBHB9.909e-1260.71ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOPS9.909e-1254.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOPB9.909e-1254.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOP59.909e-1254.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOP29.909e-1254.24ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC05011B12SK AbsAOv1 Citrus clementina cDNA clone C05011B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294110 ID=CX294110; Name=CX294110; organism=Citrus clementina; type=EST; length=538bp
CTGGGTAAGCAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACA
TTTTACTGAAAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGA
ATACTGGTGCCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAA
GCCATGTATGAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGC
TGTTGTGGTAGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCG
GAGGGAAAATTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAA
GCCGAGCGGAAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGA
GAGTGAAGCAGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGC
ACCACGATGATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTA
GAAATCATATTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGT
TCTTGAATTCGTTGGAAAGGAATAAGGAAAATATCATA
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