CX294110

Overview
NameCX294110
Unique NameCX294110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_SHEB8 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella baltica (strain OS185) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 174
            L KQY  LF M  V+L F E AL+ IA KA ++ TGARGLR+I+ESIL + MY+IP V
Sbjct:  334 LTKQYSALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVESILLDTMYDIPSV 391          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_SHEB5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 174
            L KQY  LF M  V+L F E AL+ IA KA ++ TGARGLR+I+ESIL + MY+IP V
Sbjct:  334 LTKQYSALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVESILLDTMYDIPSV 391          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_SHEB2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella baltica (strain OS223) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDV 174
            L KQY  LF M  V+L F E AL+ IA KA ++ TGARGLR+I+ESIL + MY+IP V
Sbjct:  334 LTKQYSALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVESILLDTMYDIPSV 391          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_RHIL3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 32/57 (56.14%), Postives = 45/57 (78.95%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            KQY+RLF M +V+L+F E ALR IA+KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  335 KQYQRLFEMEDVELNFHEDALREIARKAIVRKTGARGLRSIMEKILLDTMFELPTLE 391          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_PSYCK (ATP-dependent Clp protease ATP-binding subunit clpX OS=Psychrobacter cryohalolentis (strain K5) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQYK LF M    + FT++AL  IAKKA A+ TGARGLR+I+E+ L E MYE+P +K
Sbjct:  345 LVKQYKYLFDMEGADITFTKEALDAIAKKAMARKTGARGLRSIVENALLETMYELPSMK 403          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_PSYA2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQYK LF M    + FT++AL  IAKKA A+ TGARGLR+I+E+ L E MYE+P +K
Sbjct:  345 LVKQYKYLFDMEGADITFTKEALDAIAKKAMARKTGARGLRSIVENALLETMYELPSMK 403          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_METPB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY+RLF M NV+L F ++AL ++A+KA  + TGARGLR+ILE+IL + MY++P
Sbjct:  330 LVKQYQRLFEMENVELTFQDEALGLVARKAIERKTGARGLRSILETILLDTMYDLP 385          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_MARMM (ATP-dependent Clp protease ATP-binding subunit clpX OS=Maricaulis maris (strain MCS10) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M  V L FTE AL+ IA +A A+ TGARGLR+I+E IL E M+++P ++
Sbjct:  332 LVKQYQRLFEMEGVGLTFTEDALKAIANRAIARKTGARGLRSIMEGILLETMFDLPSLE 390          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_HELMI (ATP-dependent Clp protease ATP-binding subunit clpX OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 31/56 (55.36%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY++ F ++ V+L FT+ ALR IA++A  +NTGARGLRAILE ++ + MY+IP
Sbjct:  329 LVKQYQKFFELDQVQLEFTDDALRAIAQEAIKRNTGARGLRAILEEVMLDVMYDIP 384          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_CORA7 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.690e-11
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 171
            L KQY+RLFSM+  +LHF ++AL  IA+ A  + TGARGLRAI+E +L   MY++PD
Sbjct:  343 LVKQYQRLFSMDGAELHFEDEALEAIAELALERKTGARGLRAIMEELLVPIMYDLPD 399          
The following BLAST results are available for this feature:
BLAST of CX294110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CLPX_SHEB81.690e-1158.62ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEB51.690e-1158.62ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEB21.690e-1158.62ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHIL31.690e-1156.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSYCK1.690e-1157.63ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSYA21.690e-1157.63ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METPB1.690e-1157.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MARMM1.690e-1155.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_HELMI1.690e-1155.36ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CORA71.690e-1156.14ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC05011B12SK AbsAOv1 Citrus clementina cDNA clone C05011B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294110 ID=CX294110; Name=CX294110; organism=Citrus clementina; type=EST; length=538bp
CTGGGTAAGCAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACA
TTTTACTGAAAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGA
ATACTGGTGCCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAA
GCCATGTATGAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGC
TGTTGTGGTAGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCG
GAGGGAAAATTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAA
GCCGAGCGGAAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGA
GAGTGAAGCAGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGC
ACCACGATGATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTA
GAAATCATATTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGT
TCTTGAATTCGTTGGAAAGGAATAAGGAAAATATCATA
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