CX294110

Overview
NameCX294110
Unique NameCX294110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_BRUMB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M NV+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  332 LVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_BRUAB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella abortus GN=clpX PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M NV+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  332 LVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_BRUA2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella abortus (strain 2308) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M NV+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  332 LVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_BRUA1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Brucella abortus (strain S19) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M NV+L F + ALR IA KA  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  332 LVKQYQRLFDMENVELVFHDDALRAIANKAVERKTGARGLRSIMEKILLDTMFELPTLE 390          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_BRASO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bradyrhizobium sp. (strain ORS278) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 31/59 (52.54%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M N++L F ++AL  +++KA  + TGARGLR+ILESIL E M+++P ++
Sbjct:  330 LVKQYQRLFEMENIELTFADEALGAVSRKAIERKTGARGLRSILESILLETMFDLPGLE 388          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_BRAJA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bradyrhizobium japonicum GN=clpX PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.207e-11
Identity = 31/59 (52.54%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M N++L F ++AL  +A+KA  + TGARGLR+ILE+IL E M+++P ++
Sbjct:  330 LVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILEAILLETMFDLPGLE 388          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_ZYMMO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Zymomonas mobilis GN=clpX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY++LF + + KL FTE AL  IAKK   + TGARGLR+ILE IL + M+E+P ++
Sbjct:  330 LVKQYQKLFELEDAKLEFTEDALAAIAKKGIERKTGARGLRSILEGILLDTMFELPSLE 388          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_THEYD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY++LFS++ VKL FT+ ALR IAKKA  + TGAR LR+ILE I+ + MY IP
Sbjct:  321 LVKQYQKLFSIDGVKLTFTDDALRAIAKKAIERKTGARALRSILEDIMLDVMYLIP 376          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_SINMW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Sinorhizobium medicae (strain WSM419) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M +V+L+F E ALR IA++A  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  333 LVKQYQRLFEMEDVELNFHEDALREIARRAIVRKTGARGLRSIMEKILLDTMFELPTLE 391          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_RHOE4 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY+RLF M+ V+L FTE+AL  IA +A  + TGARGLRAI+E +L   MY+IP
Sbjct:  333 LVKQYRRLFDMDGVELEFTEEALDAIADQAILRGTGARGLRAIMEEVLLPVMYDIP 388          
The following BLAST results are available for this feature:
BLAST of CX294110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CLPX_BRUMB2.207e-1155.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRUAB2.207e-1155.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRUA22.207e-1155.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRUA12.207e-1155.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRASO2.207e-1152.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BRAJA2.207e-1152.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ZYMMO2.883e-1154.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_THEYD2.883e-1160.71ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SINMW2.883e-1154.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOE42.883e-1158.93ATP-dependent Clp protease ATP-binding subunit clp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05011B12SK AbsAOv1 Citrus clementina cDNA clone C05011B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294110 ID=CX294110; Name=CX294110; organism=Citrus clementina; type=EST; length=538bp
CTGGGTAAGCAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACA
TTTTACTGAAAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGA
ATACTGGTGCCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAA
GCCATGTATGAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGC
TGTTGTGGTAGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCG
GAGGGAAAATTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAA
GCCGAGCGGAAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGA
GAGTGAAGCAGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGC
ACCACGATGATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTA
GAAATCATATTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGT
TCTTGAATTCGTTGGAAAGGAATAAGGAAAATATCATA
back to top