CX294110

Overview
NameCX294110
Unique NameCX294110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_RHOBA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodopirellula baltica GN=clpX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPD 171
            L KQY+ LF+M N +L FTE+AL  IAKKA  K  GARGLR I+E ++ + MY++P+
Sbjct:  381 LVKQYQALFAMENCELEFTEEALHAIAKKAVDKGVGARGLRGIMEDVMLDIMYDLPE 437          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_RHIME (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium meliloti GN=clpX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M +V+L+F E ALR IA++A  + TGARGLR+I+E IL + M+E+P ++
Sbjct:  333 LVKQYQRLFEMEDVELNFHEDALREIARRAIVRKTGARGLRSIMEKILLDTMFELPTLE 391          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_METSB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY+RLF M N +L F ++AL V+AKKA  + TGARGLR+I+E IL + M+++P
Sbjct:  330 LVKQYQRLFEMENTELSFQDEALNVVAKKAIERRTGARGLRSIMEGILLDTMFDLP 385          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_HAHCH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Hahella chejuensis (strain KCTC 2396) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY +LF M +V++ F E ALR IAKKA  + TGARGLR+ILE +L + MY+IP
Sbjct:  335 LTKQYSKLFEMESVEVDFREDALRSIAKKAMERKTGARGLRSILEQVLLKTMYDIP 390          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_GLUOX (ATP-dependent Clp protease ATP-binding subunit clpX OS=Gluconobacter oxydans GN=clpX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            KQY RLF M  VKL FTE AL  IAK+A  + TGARGLR+ILESIL   M+++P ++
Sbjct:  331 KQYGRLFEMEGVKLTFTEDALAAIAKRAIERKTGARGLRSILESILLGTMFDLPGLE 387          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_GLUDA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY RLF M  VKL FT+ AL+ +A +A A+ TGARGLRAI+ESIL   M+++P ++
Sbjct:  329 LVKQYARLFQMEGVKLTFTDDALKQVALRAIARRTGARGLRAIMESILLSTMFDLPGLE 387          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_DESAH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            KQY+RLF   NVKL FTE+AL  +AK+A  + +GARGLRAI+E  + + MYE+P  +
Sbjct:  333 KQYQRLFEFENVKLTFTEEALAAMAKEAVTRRSGARGLRAIMEETMLDIMYELPSTE 389          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_CLOPS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium perfringens (strain SM101 / Type A) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQYK+LF ++NVKL FTE+AL+ IA +A  + TGARGLRAI+E  + + M++IP
Sbjct:  330 LVKQYKKLFELDNVKLDFTEEALKAIADEAINRKTGARGLRAIVEETMMDIMFDIP 385          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_CLOPE (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium perfringens GN=clpX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQYK+LF ++NVKL FTE+AL+ IA +A  + TGARGLRAI+E  + + M++IP
Sbjct:  330 LVKQYKKLFELDNVKLDFTEEALKAIADEAINRKTGARGLRAIVEETMMDIMFDIP 385          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_CLOP1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=clpX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQYK+LF ++NVKL FTE+AL+ IA +A  + TGARGLRAI+E  + + M++IP
Sbjct:  330 LVKQYKKLFELDNVKLDFTEEALKAIADEAINRKTGARGLRAIVEETMMDIMFDIP 385          
The following BLAST results are available for this feature:
BLAST of CX294110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CLPX_RHOBA2.883e-1154.39ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHIME2.883e-1154.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METSB2.883e-1155.36ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_HAHCH2.883e-1158.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_GLUOX2.883e-1159.65ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_GLUDA2.883e-1155.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_DESAH2.883e-1154.39ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOPS2.883e-1157.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOPE2.883e-1157.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOP12.883e-1157.14ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC05011B12SK AbsAOv1 Citrus clementina cDNA clone C05011B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294110 ID=CX294110; Name=CX294110; organism=Citrus clementina; type=EST; length=538bp
CTGGGTAAGCAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACA
TTTTACTGAAAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGA
ATACTGGTGCCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAA
GCCATGTATGAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGC
TGTTGTGGTAGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCG
GAGGGAAAATTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAA
GCCGAGCGGAAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGA
GAGTGAAGCAGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGC
ACCACGATGATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTA
GAAATCATATTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGT
TCTTGAATTCGTTGGAAAGGAATAAGGAAAATATCATA
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