CX294121

Overview
NameCX294121
Unique NameCX294121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1B_HUMAN (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Homo sapiens GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 2.108e-40
Identity = 75/95 (78.95%), Postives = 85/95 (89.47%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSKFGFGSTTTAKP 285
            RGVSFTFGAD V+ FL +HDLDL+CRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAG MMSVDETLMCSFQILKPS+KK+K+ +G   + +P
Sbjct:  220 RGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKKAKYQYGGLNSGRP 314          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1B_CHICK (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Gallus gallus GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 2.108e-40
Identity = 75/95 (78.95%), Postives = 85/95 (89.47%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSKFGFGSTTTAKP 285
            RGVSFTFGAD V+ FL +HDLDL+CRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAG MMSVDETLMCSFQILKPS+KK+K+ +G   + +P
Sbjct:  220 RGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKKAKYQYGGLNSGRP 314          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1B_BOVIN (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Bos taurus GN=PPP1CB PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.108e-40
Identity = 75/95 (78.95%), Postives = 85/95 (89.47%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSKFGFGSTTTAKP 285
            RGVSFTFGAD V+ FL +HDLDL+CRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAG MMSVDETLMCSFQILKPS+KK+K+ +G   + +P
Sbjct:  220 RGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKKAKYQYGGLNSGRP 314          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP13_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 3 OS=Arabidopsis thaliana GN=TOPP3 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.108e-40
Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSKFGFGSTTTAK---PSNGG 297
            RGVS+TFGADKV +FLQ HDLDL+CRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVD++L CSFQILK S+KK  FGFG     +   P  GG
Sbjct:  218 RGVSYTFGADKVEEFLQTHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDDSLTCSFQILKASEKKGNFGFGKNAGRRGTPPRKGG 319          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1_ORYSJ (Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 2.753e-40
Identity = 75/85 (88.24%), Postives = 84/85 (98.82%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSKF 255
            RGVS+TFGADKV++FL+KHDLDL+CRAHQVVEDGYEFFA+RQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP+++K KF
Sbjct:  232 RGVSYTFGADKVSEFLEKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAERKGKF 316          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP11_ACECL (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 4.696e-40
Identity = 77/98 (78.57%), Postives = 85/98 (86.73%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSKFGFGSTTTAKPSNG 294
            RGVS+TFG D VT+FLQ+HDLDLVCRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAGA+MSVD+TLMCSFQILKPS+KK KF  G  + A    G
Sbjct:  218 RGVSYTFGPDTVTEFLQRHDLDLVCRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGALMSVDDTLMCSFQILKPSEKKGKFMQGGNSLAGAGRG 315          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1_MEDVA (Serine/threonine-protein phosphatase PP1 OS=Medicago varia GN=PP1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 8.010e-40
Identity = 77/102 (75.49%), Postives = 87/102 (85.29%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSKFGFGSTTT---AKPSNGG 297
            RGVSFTFGADKV +FL+ HDLDL+CRAHQVVEDGYEFFA R+LVT+FSAPNYCGEFDNAGAMMSVD++L CSFQILK SDKK K GFG+ ++     P  GG
Sbjct:  218 RGVSFTFGADKVVEFLEHHDLDLICRAHQVVEDGYEFFAKRKLVTVFSAPNYCGEFDNAGAMMSVDDSLTCSFQILKSSDKKGKVGFGNNSSRPGTPPHKGG 319          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1B_CANFA (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Canis familiaris GN=PPP1CB PE=2 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 1.046e-39
Identity = 74/95 (77.89%), Postives = 84/95 (88.42%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSKFGFGSTTTAKP 285
            RGVSFTFGAD V+ FL +HDLDL+CRAHQVVEDGYEFFA RQLV +FSAPNYCGEFDNAG MMSVDETLMCSFQILKPS+KK+K+ +G   + +P
Sbjct:  220 RGVSFTFGADVVSKFLNRHDLDLICRAHQVVEDGYEFFAKRQLVILFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKKAKYQYGGLNSGRP 314          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP11_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Arabidopsis thaliana GN=TOPP1 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.366e-39
Identity = 73/85 (85.88%), Postives = 82/85 (96.47%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSKF 255
            RGVS+TFGADKV +FL+KHD+DL+CRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAGAMMS+DE+LMCSFQILKPS+KKS F
Sbjct:  233 RGVSYTFGADKVAEFLEKHDMDLICRAHQVVEDGYEFFAERQLVTVFSAPNYCGEFDNAGAMMSIDESLMCSFQILKPSEKKSPF 317          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1_EMENI (Serine/threonine-protein phosphatase PP1 OS=Emericella nidulans GN=bimG PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.331e-39
Identity = 72/95 (75.79%), Postives = 87/95 (91.58%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSKFGFGSTTTAKP 285
            RGVSFTFG D V+ FLQKHD+DL+CRAHQVVEDGYEFF+ RQLVT+FSAPNYCGEFDNAGAMMSVDE+L+CSFQILKP++KK K+ +G+ ++ +P
Sbjct:  220 RGVSFTFGPDVVSRFLQKHDMDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGAMMSVDESLLCSFQILKPAEKKQKYVYGAMSSGRP 314          
The following BLAST results are available for this feature:
BLAST of CX294121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
PP1B_HUMAN2.108e-4078.95Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_CHICK2.108e-4078.95Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_BOVIN2.108e-4078.95Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP13_ARATH2.108e-4077.45Serine/threonine-protein phosphatase PP1 isozyme 3... [more]
PP1_ORYSJ2.753e-4088.24Serine/threonine-protein phosphatase PP1 OS=Oryza ... [more]
PP11_ACECL4.696e-4078.57Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP1_MEDVA8.010e-4075.49Serine/threonine-protein phosphatase PP1 OS=Medica... [more]
PP1B_CANFA1.046e-3977.89Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP11_ARATH1.366e-3985.88Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP1_EMENI2.331e-3975.79Serine/threonine-protein phosphatase PP1 OS=Emeric... [more]

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Properties
Property NameValue
Genbank descriptionC05011D02SK AbsAOv1 Citrus clementina cDNA clone C05011D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294121 ID=CX294121; Name=CX294121; organism=Citrus clementina; type=EST; length=521bp
AGGGGAGTTTCATTTACTTTTGGTGCTGACAAAGTGACAGACTTTCTGCA
GAAGCATGATCTGGATCTCGTTTGTCGTGCTCACCAGGTCGTAGAGGATG
GATATGAGTTCTTTGCCAACCGACAGCTTGTTACTATTTTTTCAGCACCT
AATTATTGCGGGGAGTTTGATAATGCTGGTGCAATGATGTCTGTTGATGA
GACACTAATGTGCTCTTTCCAAATATTAAAGCCCTCAGACAAGAAGTCGA
AGTTCGGTTTTGGGAGCACAACTACTGCAAAGCCTTCCAACGGTGGCAAT
GTCTTTGGAAGCACAACTACAGCCAAGCCTGGAAACACACCTGCAGGAGT
CAAGTCTTTCCTTGGTAAGGTATGACAAATTGGTTTGCTGGATAGAGGCC
AACTTCCAGTGGGTTAATGCACATGCGGGGGACTGCAATTAAAGTAATAT
TCTCAGGTCTTTTTGATTTTTCTATAATATTTTGAATTGTATAAAATTGC
GACAGCAAGAGAAAAGAAGTC
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