CX294121

Overview
NameCX294121
Unique NameCX294121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP14_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 4 OS=Arabidopsis thaliana GN=TOPP4 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.044e-39
Identity = 74/85 (87.06%), Postives = 82/85 (96.47%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSKF 255
            RGVS+TFG DKV++FL KHDLDLVCRAHQVVEDGYEFFA+RQLVT+FSAPNYCGEFDNAGAMMSVDE LMCSFQILKP++KK+KF
Sbjct:  231 RGVSYTFGPDKVSEFLTKHDLDLVCRAHQVVEDGYEFFADRQLVTVFSAPNYCGEFDNAGAMMSVDENLMCSFQILKPAEKKTKF 315          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP16_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 6 OS=Arabidopsis thaliana GN=TOPP6 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 5.192e-39
Identity = 76/102 (74.51%), Postives = 85/102 (83.33%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSKFGFGSTTT---AKPSNGG 297
            RGVS+TFGADKV +FLQ HDLDL+CRAHQVVEDGYEFFA RQLVTIFSAPNYCGEFDNAGA+MSVD++L CSFQILK S+KK +FGF +        P  GG
Sbjct:  218 RGVSYTFGADKVAEFLQTHDLDLICRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGALMSVDDSLTCSFQILKASEKKGRFGFNNNVPRPGTPPHKGG 319          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1_NEUCR (Serine/threonine-protein phosphatase PP1 OS=Neurospora crassa GN=ppp-1 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.973e-38
Identity = 72/86 (83.72%), Postives = 81/86 (94.19%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSKFG 258
            RGVSFTFG D V+ FLQKHD+DL+CRAHQVVEDGYEFF+ RQLVT+FSAPNYCGEFDNAGAMMSVDE+L+CSFQILKP++KK KFG
Sbjct:  221 RGVSFTFGPDVVSRFLQKHDMDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGAMMSVDESLLCSFQILKPAEKKQKFG 306          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP12_TOBAC (Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Nicotiana tabacum GN=NPP2 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.577e-38
Identity = 72/85 (84.71%), Postives = 80/85 (94.12%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSKF 255
            RGVS+TFG+DKV +FL +HD+DLVCRAHQVVEDGYEFFA RQLVTIFSAPNYCGEFDNAGAMMSVDE LMCSFQILKP+D+K +F
Sbjct:  225 RGVSYTFGSDKVAEFLMQHDMDLVCRAHQVVEDGYEFFAERQLVTIFSAPNYCGEFDNAGAMMSVDENLMCSFQILKPTDRKPRF 309          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP11_TOBAC (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Nicotiana tabacum GN=NPP1 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.365e-38
Identity = 72/85 (84.71%), Postives = 80/85 (94.12%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSKF 255
            RGVS+TFG DKV +FL +HD+DLVCRAHQVVEDGYEFFA RQLVTIFSAPNYCGEFDNAGAMMSVDE+LMCSFQILKP+D+K +F
Sbjct:  232 RGVSYTFGPDKVAEFLMQHDMDLVCRAHQVVEDGYEFFAERQLVTIFSAPNYCGEFDNAGAMMSVDESLMCSFQILKPTDRKPRF 316          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1B_DROME (Serine/threonine-protein phosphatase beta isoform OS=Drosophila melanogaster GN=flw PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.395e-38
Identity = 70/96 (72.92%), Postives = 85/96 (88.54%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDKKSKFGFGSTTTAKPS 288
            RGVSFTFG D V+ FL +H+LDL+CRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAG MM+VD+TLMCSFQILKPS+KK+K+ +    +++P+
Sbjct:  220 RGVSFTFGVDVVSKFLNRHELDLICRAHQVVEDGYEFFARRQLVTLFSAPNYCGEFDNAGGMMTVDDTLMCSFQILKPSEKKAKYLYSGMNSSRPT 315          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1A_RAT (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Rattus norvegicus GN=Ppp1ca PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.395e-38
Identity = 75/87 (86.21%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDK-KSKFG 258
            RGVSFTFGA+ V  FL KHDLDL+CRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAGAMMSVDETLMCSFQILKP+DK K K+G
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKNKGKYG 307          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1A_RABIT (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Oryctolagus cuniculus GN=PPP1CA PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.395e-38
Identity = 75/87 (86.21%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDK-KSKFG 258
            RGVSFTFGA+ V  FL KHDLDL+CRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAGAMMSVDETLMCSFQILKP+DK K K+G
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKNKGKYG 307          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1A_MOUSE (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Mus musculus GN=Ppp1ca PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.395e-38
Identity = 75/87 (86.21%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDK-KSKFG 258
            RGVSFTFGA+ V  FL KHDLDL+CRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAGAMMSVDETLMCSFQILKP+DK K K+G
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKNKGKYG 307          
BLAST of CX294121 vs. ExPASy Swiss-Prot
Match: PP1A_HUMAN (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Homo sapiens GN=PPP1CA PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.395e-38
Identity = 75/87 (86.21%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 RGVSFTFGADKVTDFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPSDK-KSKFG 258
            RGVSFTFGA+ V  FL KHDLDL+CRAHQVVEDGYEFFA RQLVT+FSAPNYCGEFDNAGAMMSVDETLMCSFQILKP+DK K K+G
Sbjct:  221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKNKGKYG 307          
The following BLAST results are available for this feature:
BLAST of CX294121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
PP14_ARATH3.044e-3987.06Serine/threonine-protein phosphatase PP1 isozyme 4... [more]
PP16_ARATH5.192e-3974.51Serine/threonine-protein phosphatase PP1 isozyme 6... [more]
PP1_NEUCR1.973e-3883.72Serine/threonine-protein phosphatase PP1 OS=Neuros... [more]
PP12_TOBAC2.577e-3884.71Serine/threonine-protein phosphatase PP1 isozyme 2... [more]
PP11_TOBAC3.365e-3884.71Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP1B_DROME4.395e-3872.92Serine/threonine-protein phosphatase beta isoform ... [more]
PP1A_RAT4.395e-3886.21Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_RABIT4.395e-3886.21Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_MOUSE4.395e-3886.21Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_HUMAN4.395e-3886.21Serine/threonine-protein phosphatase PP1-alpha cat... [more]

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Properties
Property NameValue
Genbank descriptionC05011D02SK AbsAOv1 Citrus clementina cDNA clone C05011D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294121 ID=CX294121; Name=CX294121; organism=Citrus clementina; type=EST; length=521bp
AGGGGAGTTTCATTTACTTTTGGTGCTGACAAAGTGACAGACTTTCTGCA
GAAGCATGATCTGGATCTCGTTTGTCGTGCTCACCAGGTCGTAGAGGATG
GATATGAGTTCTTTGCCAACCGACAGCTTGTTACTATTTTTTCAGCACCT
AATTATTGCGGGGAGTTTGATAATGCTGGTGCAATGATGTCTGTTGATGA
GACACTAATGTGCTCTTTCCAAATATTAAAGCCCTCAGACAAGAAGTCGA
AGTTCGGTTTTGGGAGCACAACTACTGCAAAGCCTTCCAACGGTGGCAAT
GTCTTTGGAAGCACAACTACAGCCAAGCCTGGAAACACACCTGCAGGAGT
CAAGTCTTTCCTTGGTAAGGTATGACAAATTGGTTTGCTGGATAGAGGCC
AACTTCCAGTGGGTTAATGCACATGCGGGGGACTGCAATTAAAGTAATAT
TCTCAGGTCTTTTTGATTTTTCTATAATATTTTGAATTGTATAAAATTGC
GACAGCAAGAGAAAAGAAGTC
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