CX294124

Overview
NameCX294124
Unique NameCX294124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7723 contig Ccv1_Contig7723:160..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.481e-23
Identity = 56/132 (42.42%), Postives = 74/132 (56.06%), Query Frame = 1
Query:   31 GFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            G  A P  +PD   N+M W+  I G A T +E G F L + F E YP+KPP+ KF    FHPNVY +G +CL IL   N W P   V  +L  IQ LL+ PN   PA  E  +L+  +  EY +RVR+  ++
Sbjct:   23 GVSASP--IPD---NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDIL--QNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVER 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.108e-22
Identity = 56/132 (42.42%), Postives = 73/132 (55.30%), Query Frame = 1
Query:   31 GFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            G  A P  +PD   N+M W+  I G A T +E G F L +HF E YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  +L  IQ LL+ PN    A  E  +L+  +  EY +RVR+  ++
Sbjct:   23 GVSASP--VPD---NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDIL--QNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRETVEK 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.108e-22
Identity = 51/118 (43.22%), Postives = 68/118 (57.63%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 426
            N+++W   I G   + WEG  F L+L FSE+YP+  P  KF    FHPNVY  G++CL IL   N W P   +  IL  IQ LL  PNP  PA +E   LF ++  EY R+V++  +Q
Sbjct:   32 NILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDIL--QNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKEIVEQ 147          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.447e-22
Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G A + + GG F +T+HF  DYP KPPK  F    FHPN+  +G++CL IL E   W PA+T+ ++L+ I  LL  PNP DP   E  H++  D A+Y+   R   ++Y
Sbjct:   33 WQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.889e-22
Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G + + + GG F +T+HF  DYP KPPK  F    FHPNV  +G++CL IL E   W PA+T+ ++L+ I  LL  PNP DP   E  H++  D A+Y+   R   ++Y
Sbjct:   33 WQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.497e-22
Identity = 57/128 (44.53%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   31 GFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQ 414
            G  A P  LPD   N+M W+  I G + T +E G F L L F E YP+KPP+ KF    FHPNVY SG +CL IL   N W P   V  IL  +Q LL+ PN + PA  E  +L+    + Y +RVR+
Sbjct:   23 GVSASP--LPD---NVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDIL--QNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYKDHRSLYVKRVRE 143          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.179e-22
Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            +L  W  TI G A + + GG F L++HF  DYP KPPK  F    +HPN+  +G++CL IL +   W PA+T+ ++L+ I  LL  PNP DP   E  H++  D + Y+   R+  ++Y
Sbjct:   29 DLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.225e-21
Identity = 47/115 (40.87%), Postives = 67/115 (58.26%), Query Frame = 1
Query:   85 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            W  TI G   + + GG F +++HF  DYP KPPK  F    FHPN+  +G++CL IL E   W PA+T+ ++L+ I  LL  PNP DP   E  H++  D A+Y+   R   ++Y
Sbjct:   33 WQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 145          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.225e-21
Identity = 50/113 (44.25%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVR 411
            N++ W+  I G A T +E G F + L F E YP+KPP  KF    FHPNVY SG +CL IL   N W P   V  IL  +Q LL+ PN + PA  E   L+     +Y++RVR
Sbjct:   32 NVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDIL--QNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVR 142          
BLAST of CX294124 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.225e-21
Identity = 49/119 (41.18%), Postives = 68/119 (57.14%), Query Frame = 1
Query:   73 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 429
            +L  W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+TV ++L+ I  LL  PNP DP   E  H +  D  +Y R  R+  ++Y
Sbjct:   29 DLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQ--WSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKY 145          
The following BLAST results are available for this feature:
BLAST of CX294124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
UBC2_TRIHA8.481e-2342.42Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_NEUCR1.108e-2242.42Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC2_DICDI1.108e-2243.22Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC8_ARATH1.447e-2242.61Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC28_ARATH1.889e-2242.61Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC2_CANAL5.497e-2244.53Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBC4_SCHPO7.179e-2239.50Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC4_SOLLC1.225e-2140.87Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC2_YARLI1.225e-2144.25Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UB2D4_HUMAN1.225e-2141.18Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC05011D05SK AbsAOv1 Citrus clementina cDNA clone C05011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294124 ID=CX294124; Name=CX294124; organism=Citrus clementina; type=EST; length=570bp
TCGGCCACTACGGCCGGGGGTGAACTCTAGGGTTTCGTGGCAAAGCCTGA
GACGTTGCCGGACGGTTCGGTGAATCTGATGGTGTGGCATTGCACTATTC
CCGGAAAAGCCGGAACTGATTGGGAGGGTGGTTTCTTCCCACTCACTCTC
CACTTCAGCGAAGATTACCCTAGCAAGCCACCAAAGTGCAAGTTTCCGCA
AGGATTTTTCCACCCTAATGTCTATCCATCTGGAACTGTTTGTCTATCAA
TCCTCAATGAGGACAATGGGTGGAGACCAGCCATCACAGTGAAGCAAATT
CTTGTCGGTATCCAAGACTTGTTGGACCAGCCAAATCCTGCAGATCCTGC
ACAAACAGAAGGTTATCATCTCTTCATTCAGGATGCTGCAGAGTACAAGA
GAAGAGTTCGGCAGCAAGCCAAGCAATACCCTGCACTCCTCTAAATTTAT
GTTCTGGTTTTTTTATGGACTTTTATTAAACTCTTGGTAATTGTGAACTG
TCTTTTGTAAAATGCCATTGCTAAACTTGCTTTGTAATAAAGTACCATTT
GTACTGTTGCCATGTTAACT
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