CX294126

Overview
NameCX294126
Unique NameCX294126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_PARD8 (Asparaginyl-tRNA synthetase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=asnS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.130e-22
Identity = 49/80 (61.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query:   13 GMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTT 252
            G  DPA YP+ K   ++EFLR+    RPRTNT  AV RIR+ +AYA H F   +GF Y HTPIIT SDCEGAG+MFQVTT
Sbjct:  101 GTADPATYPLQKKGHSMEFLREIAHLRPRTNTFGAVFRIRHNMAYAIHKFFHDRGFFYFHTPIITASDCEGAGQMFQVTT 180          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYNO_ARATH (Asparaginyl-tRNA synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SYNO PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 3.130e-22
Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    1 VLDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLI 258
            ++ VG  D + YPI K +++ EFLR +   RPRTNT  AVAR+RN LAYATH F Q+ GF+++ +PIIT SDCEGAGE F VTTLI
Sbjct:  189 IIVVGECD-SSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDCEGAGEQFCVTTLI 273          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_CYTH3 (Asparaginyl-tRNA synthetase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=asnS PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.088e-22
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 1
Query:   10 VGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            +G+ DP  YP+ K   +LEFLR+    RPRTNT + V R+R+A+A+A H+F  ++GF+Y+HTPIIT SD EGAG MFQVTTL
Sbjct:   99 IGVADPETYPLQKKGHSLEFLREIAHLRPRTNTFSCVLRLRHAMAFAVHSFFNEKGFVYVHTPIITGSDAEGAGAMFQVTTL 180          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_LEGPL (Asparaginyl-tRNA synthetase OS=Legionella pneumophila (strain Lens) GN=asnS PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.972e-22
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   10 VGMVD-PAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V+ P  YPI   + TLEFLR+    RPRTNTI+AV R+R++LA A H F  +QGF ++HTPIIT SDCEGAGEMF+V+TL
Sbjct:  101 VGWVENPDTYPIQAKRHTLEFLREVAHLRPRTNTISAVTRVRHSLAQAIHRFYHEQGFFWVHTPIITASDCEGAGEMFRVSTL 183          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_LEGPC (Asparaginyl-tRNA synthetase OS=Legionella pneumophila (strain Corby) GN=asnS PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.972e-22
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   10 VGMVD-PAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V+ P  YPI   + TLEFLR+    RPRTNTI+AV R+R++LA A H F  +QGF ++HTPIIT SDCEGAGEMF+V+TL
Sbjct:  101 VGWVENPDTYPIQAKRHTLEFLREVAHLRPRTNTISAVTRVRHSLAQAIHRFYHEQGFFWVHTPIITASDCEGAGEMFRVSTL 183          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_LEGPA (Asparaginyl-tRNA synthetase OS=Legionella pneumophila (strain Paris) GN=asnS PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.972e-22
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   10 VGMVD-PAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V+ P  YPI   + TLEFLR+    RPRTNTI+AV R+R++LA A H F  +QGF ++HTPIIT SDCEGAGEMF+V+TL
Sbjct:  101 VGWVENPDTYPIQAKRHTLEFLREVAHLRPRTNTISAVTRVRHSLAQAIHRFYHEQGFFWVHTPIITASDCEGAGEMFRVSTL 183          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_PORG3 (Asparaginyl-tRNA synthetase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=asnS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.106e-22
Identity = 48/85 (56.47%), Postives = 58/85 (68.24%), Query Frame = 1
Query:   13 GMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDA 267
            G  DPA YP+ K   TLEFLR+    RPRTNT   + RIR+ +A A HTF   +G+ Y H P+IT SDCEGAG+MFQVTTL  D+
Sbjct:  102 GTADPATYPLQKKGHTLEFLREIAHLRPRTNTFGVIYRIRHHMAIAIHTFFHNKGYYYFHAPLITASDCEGAGQMFQVTTLNPDS 186          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_AZOPC (Asparaginyl-tRNA synthetase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=asnS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.519e-21
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   13 GMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            G+ DP+ YP+ K   +LEFLR+    RPRTNT   + RIR+ LAYA H +  KQGF Y HTPIIT+SD EGAG MFQ+T L
Sbjct:  100 GIADPSVYPLQKKWHSLEFLREIAYLRPRTNTFGCILRIRHHLAYAIHKYFNKQGFFYFHTPIITSSDAEGAGSMFQITDL 180          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_GEOMG (Asparaginyl-tRNA synthetase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=asnS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.902e-21
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = 1
Query:   10 VGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVVKEKGEAVAKL 372
            +G+ D + YP+ K + + E+LR     RPR+NT  AV R+R+++A A H F  ++GFLY+HTPIITTSDCEGAGEMF+VTTL    D     L++       D  AA+  +   G+   +L
Sbjct:   98 IGLADES-YPLQKKRHSFEYLRSIAHLRPRSNTFGAVFRVRSSVAQAVHRFFAERGFLYVHTPIITTSDCEGAGEMFRVTTL----DPAAPPLLEGEVDFSRDFFAAQAGLTVSGQLEGEL 213          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_GEOSL (Asparaginyl-tRNA synthetase OS=Geobacter sulfurreducens GN=asnS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.709e-21
Identity = 49/85 (57.65%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 VLDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            V+ VG  D  +YP+ K + T E+LR     RPR+NT  AV R+R++LA A H F  ++GFLY+HTPIITTSDCEGAGE+F+VTTL
Sbjct:   95 VVVVGGADE-QYPLQKKRHTFEYLRTIAHLRPRSNTFGAVFRVRSSLAQAVHRFFAERGFLYVHTPIITTSDCEGAGELFRVTTL 178          
The following BLAST results are available for this feature:
BLAST of CX294126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
SYN_PARD83.130e-2261.25Asparaginyl-tRNA synthetase OS=Parabacteroides dis... [more]
SYNO_ARATH3.130e-2259.30Asparaginyl-tRNA synthetase, chloroplastic/mitocho... [more]
SYN_CYTH34.088e-2257.32Asparaginyl-tRNA synthetase OS=Cytophaga hutchinso... [more]
SYN_LEGPL6.972e-2261.45Asparaginyl-tRNA synthetase OS=Legionella pneumoph... [more]
SYN_LEGPC6.972e-2261.45Asparaginyl-tRNA synthetase OS=Legionella pneumoph... [more]
SYN_LEGPA6.972e-2261.45Asparaginyl-tRNA synthetase OS=Legionella pneumoph... [more]
SYN_PORG39.106e-2256.47Asparaginyl-tRNA synthetase OS=Porphyromonas gingi... [more]
SYN_AZOPC4.519e-2158.02Asparaginyl-tRNA synthetase OS=Azobacteroides pseu... [more]
SYN_GEOMG5.902e-2143.80Asparaginyl-tRNA synthetase OS=Geobacter metallire... [more]
SYN_GEOSL7.709e-2157.65Asparaginyl-tRNA synthetase OS=Geobacter sulfurred... [more]

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Properties
Property NameValue
Genbank descriptionC05011D07SK AbsAOv1 Citrus clementina cDNA clone C05011D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294126 ID=CX294126; Name=CX294126; organism=Citrus clementina; type=EST; length=502bp
GTGCTCGATGTGGGTATGGTTGACCCTGCTAAGTACCCTATCCCCAAGAC
AAAGCTCACTCTTGAGTTTTTGAGGGATCGTATTCCTTTTCGGCCCAGGA
CAAACACGATAGCTGCGGTTGCACGAATTCGAAATGCACTTGCTTATGCC
ACTCATACATTCCTTCAGAAGCAAGGGTTTCTCTACATTCACACTCCAAT
TATCACCACCAGTGATTGTGAGGGTGCTGGTGAGATGTTTCAAGTTACAA
CTCTAATAAGTGATGCTGACAAGTTGGAGAAGGAACTGATCAAGAATCCT
CCTCCATCAGAAGCTGACATAGAAGCCGCCAAGCTTGTTGTCAAGGAGAA
AGGAGAGGCTGTTGCAAAACTAAAATCTGATAAAGCAGGCAAGGAGGCGA
TAAGTGCTAGTGTTACTGAACTTACAAAAGCGAAAGAGAATCTTGCAAGG
CTCGAGGAAAGATCAAAGCTTAAGCCAGGAATCCCACAAAAGATGGAAGA
TT
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