CX294126

Overview
NameCX294126
Unique NameCX294126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_ECOL6 (Asparaginyl-tRNA synthetase OS=Escherichia coli O6 GN=asnS PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_ECOL5 (Asparaginyl-tRNA synthetase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_ECOHS (Asparaginyl-tRNA synthetase OS=Escherichia coli O9:H4 (strain HS) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_ECO57 (Asparaginyl-tRNA synthetase OS=Escherichia coli O157:H7 GN=asnS PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_ECO24 (Asparaginyl-tRNA synthetase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_DESDG (Asparaginyl-tRNA synthetase OS=Desulfovibrio desulfuricans (strain G20) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   10 VGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            +G  DP  +P+ K + + E+LR     RPRTN   A  RIR   +YA H+F ++ GF  +HTPI+T SDCEGAGEMF+VTTL
Sbjct:   97 LGKADPETFPLQKKRHSDEYLRTIAHLRPRTNKFGAAFRIRAEASYAVHSFFRENGFFNVHTPILTGSDCEGAGEMFRVTTL 178          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_BACCR (Asparaginyl-tRNA synthetase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 44/93 (47.31%), Postives = 62/93 (66.67%), Query Frame = 1
Query:    4 LDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEK 282
            +D+  +  + YP+ K + T E+LR     RPRTN  +A  R+R+  A+A H F Q++GF+++HTPIIT SD EGAGEMF+VTT   D + L K
Sbjct:   96 IDIEGLSDSDYPLQKKRHTFEYLRTIAHLRPRTNAFSATFRVRSIAAFAIHQFFQERGFVHVHTPIITGSDTEGAGEMFRVTT--QDLNNLPK 186          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_MYXXD (Asparaginyl-tRNA synthetase OS=Myxococcus xanthus (strain DK 1622) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YPI   + TLEFLRD    R RTNT +AV R+R+  A A H F  ++GF +++TPIIT SD EGAG+MF+V+TL
Sbjct:  105 DPDTYPIQPKQHTLEFLRDVAHLRVRTNTFSAVTRVRHRAAQAVHRFFDEEGFFWVNTPIITASDAEGAGQMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_HAES2 (Asparaginyl-tRNA synthetase OS=Haemophilus somnus (strain 2336) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  106 DPETYPMSAKRHSIEYLREVAHLRPRTNIIGAVARVRHCLAQAIHRFFHEQGFYWVATPLITASDTEGAGEMFRVSTL 183          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_HAES1 (Asparaginyl-tRNA synthetase OS=Haemophilus somnus (strain 129Pt) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  106 DPETYPMSAKRHSIEYLREVAHLRPRTNIIGAVARVRHCLAQAIHRFFHEQGFYWVATPLITASDTEGAGEMFRVSTL 183          
The following BLAST results are available for this feature:
BLAST of CX294126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
SYN_ECOL64.677e-1853.85Asparaginyl-tRNA synthetase OS=Escherichia coli O6... [more]
SYN_ECOL54.677e-1853.85Asparaginyl-tRNA synthetase OS=Escherichia coli O6... [more]
SYN_ECOHS4.677e-1853.85Asparaginyl-tRNA synthetase OS=Escherichia coli O9... [more]
SYN_ECO574.677e-1853.85Asparaginyl-tRNA synthetase OS=Escherichia coli O1... [more]
SYN_ECO244.677e-1853.85Asparaginyl-tRNA synthetase OS=Escherichia coli O1... [more]
SYN_DESDG4.677e-1851.22Asparaginyl-tRNA synthetase OS=Desulfovibrio desul... [more]
SYN_BACCR4.677e-1847.31Asparaginyl-tRNA synthetase OS=Bacillus cereus (st... [more]
SYN_MYXXD6.108e-1855.13Asparaginyl-tRNA synthetase OS=Myxococcus xanthus ... [more]
SYN_HAES26.108e-1853.85Asparaginyl-tRNA synthetase OS=Haemophilus somnus ... [more]
SYN_HAES16.108e-1853.85Asparaginyl-tRNA synthetase OS=Haemophilus somnus ... [more]

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Properties
Property NameValue
Genbank descriptionC05011D07SK AbsAOv1 Citrus clementina cDNA clone C05011D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294126 ID=CX294126; Name=CX294126; organism=Citrus clementina; type=EST; length=502bp
GTGCTCGATGTGGGTATGGTTGACCCTGCTAAGTACCCTATCCCCAAGAC
AAAGCTCACTCTTGAGTTTTTGAGGGATCGTATTCCTTTTCGGCCCAGGA
CAAACACGATAGCTGCGGTTGCACGAATTCGAAATGCACTTGCTTATGCC
ACTCATACATTCCTTCAGAAGCAAGGGTTTCTCTACATTCACACTCCAAT
TATCACCACCAGTGATTGTGAGGGTGCTGGTGAGATGTTTCAAGTTACAA
CTCTAATAAGTGATGCTGACAAGTTGGAGAAGGAACTGATCAAGAATCCT
CCTCCATCAGAAGCTGACATAGAAGCCGCCAAGCTTGTTGTCAAGGAGAA
AGGAGAGGCTGTTGCAAAACTAAAATCTGATAAAGCAGGCAAGGAGGCGA
TAAGTGCTAGTGTTACTGAACTTACAAAAGCGAAAGAGAATCTTGCAAGG
CTCGAGGAAAGATCAAAGCTTAAGCCAGGAATCCCACAAAAGATGGAAGA
TT
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