CX294126

Overview
NameCX294126
Unique NameCX294126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_HAEPS (Asparaginyl-tRNA synthetase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   10 VGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  101 VGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHCLAQAIHRFFHEQGFYWVATPLITASDTEGAGEMFRVSTL 183          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_DESVV (Asparaginyl-tRNA synthetase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   10 VGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            +G  D   YP+ K + + EFLR     R RTN   A  RIR+  A+A H F +++GF Y+HTPI+T SDCEGAGEMF+VTTL
Sbjct:   97 LGAADAETYPLQKKRHSDEFLRSIAHLRARTNKYGAAFRIRSEAAFAIHEFYRERGFFYVHTPILTGSDCEGAGEMFRVTTL 178          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_DESVH (Asparaginyl-tRNA synthetase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   10 VGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            +G  D   YP+ K + + EFLR     R RTN   A  RIR+  A+A H F +++GF Y+HTPI+T SDCEGAGEMF+VTTL
Sbjct:   97 LGAADAETYPLQKKRHSDEFLRSIAHLRARTNKYGAAFRIRSEAAFAIHEFYRERGFFYVHTPILTGSDCEGAGEMFRVTTL 178          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_BACHK (Asparaginyl-tRNA synthetase OS=Bacillus thuringiensis subsp. konkukian GN=asnS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 41/83 (49.40%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    4 LDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTT 252
            +D+  +  + YP+ K + T E+LR     RPRTN  +A  R+R+  A+A H F Q++GF+++HTPIIT SD EGAGEMF+VTT
Sbjct:   96 IDIEGLSDSDYPLQKKRHTFEYLRTIAHLRPRTNAFSATFRVRSIAAFAIHQFFQERGFVHVHTPIITGSDTEGAGEMFRVTT 178          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_BACCZ (Asparaginyl-tRNA synthetase OS=Bacillus cereus (strain ZK / E33L) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 41/83 (49.40%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    4 LDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTT 252
            +D+  +  + YP+ K + T E+LR     RPRTN  +A  R+R+  A+A H F Q++GF+++HTPIIT SD EGAGEMF+VTT
Sbjct:   96 IDIEGLSDSDYPLQKKRHTFEYLRTIAHLRPRTNAFSATFRVRSIAAFAIHQFFQERGFVHVHTPIITGSDTEGAGEMFRVTT 178          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_BACCN (Asparaginyl-tRNA synthetase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 41/83 (49.40%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    4 LDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTT 252
            +++  +  + YP+ K + T E+LR     RPRTN  +A  R+R+  AYA H F Q++GF+++HTPIIT SD EGAGEMF+VTT
Sbjct:   96 IEIEGLSDSDYPLQKKRHTFEYLRTIAHLRPRTNAFSATFRVRSIAAYAIHKFFQERGFVHVHTPIITGSDTEGAGEMFRVTT 178          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_BACC1 (Asparaginyl-tRNA synthetase OS=Bacillus cereus (strain ATCC 10987) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 41/83 (49.40%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    4 LDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTT 252
            +D+  +  + YP+ K + T E+LR     RPRTN  +A  R+R+  A+A H F Q++GF+++HTPIIT SD EGAGEMF+VTT
Sbjct:   96 IDIEGLSDSDYPLQKKRHTFEYLRTIAHLRPRTNAFSATFRVRSIAAFAIHQFFQERGFVHVHTPIITGSDTEGAGEMFRVTT 178          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_BACAN (Asparaginyl-tRNA synthetase OS=Bacillus anthracis GN=asnS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 41/83 (49.40%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    4 LDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTT 252
            +D+  +  + YP+ K + T E+LR     RPRTN  +A  R+R+  A+A H F Q++GF+++HTPIIT SD EGAGEMF+VTT
Sbjct:   96 IDIEGLSDSDYPLQKKRHTFEYLRTIAHLRPRTNAFSATFRVRSIAAFAIHQFFQERGFVHVHTPIITGSDTEGAGEMFRVTT 178          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_ACTSZ (Asparaginyl-tRNA synthetase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   10 VGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  101 VGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNIIGAVARVRHCLAQAIHRFFHEQGFYWVATPLITASDTEGAGEMFRVSTL 183          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_ACTPJ (Asparaginyl-tRNA synthetase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   10 VGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  101 VGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHCLAQAIHRFFNEQGFYWVATPLITASDTEGAGEMFRVSTL 183          
The following BLAST results are available for this feature:
BLAST of CX294126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
SYN_HAEPS6.108e-1854.22Asparaginyl-tRNA synthetase OS=Haemophilus parasui... [more]
SYN_DESVV6.108e-1852.44Asparaginyl-tRNA synthetase OS=Desulfovibrio vulga... [more]
SYN_DESVH6.108e-1852.44Asparaginyl-tRNA synthetase OS=Desulfovibrio vulga... [more]
SYN_BACHK6.108e-1849.40Asparaginyl-tRNA synthetase OS=Bacillus thuringien... [more]
SYN_BACCZ6.108e-1849.40Asparaginyl-tRNA synthetase OS=Bacillus cereus (st... [more]
SYN_BACCN6.108e-1849.40Asparaginyl-tRNA synthetase OS=Bacillus cereus sub... [more]
SYN_BACC16.108e-1849.40Asparaginyl-tRNA synthetase OS=Bacillus cereus (st... [more]
SYN_BACAN6.108e-1849.40Asparaginyl-tRNA synthetase OS=Bacillus anthracis ... [more]
SYN_ACTSZ6.108e-1854.22Asparaginyl-tRNA synthetase OS=Actinobacillus succ... [more]
SYN_ACTPJ6.108e-1854.22Asparaginyl-tRNA synthetase OS=Actinobacillus pleu... [more]

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Properties
Property NameValue
Genbank descriptionC05011D07SK AbsAOv1 Citrus clementina cDNA clone C05011D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294126 ID=CX294126; Name=CX294126; organism=Citrus clementina; type=EST; length=502bp
GTGCTCGATGTGGGTATGGTTGACCCTGCTAAGTACCCTATCCCCAAGAC
AAAGCTCACTCTTGAGTTTTTGAGGGATCGTATTCCTTTTCGGCCCAGGA
CAAACACGATAGCTGCGGTTGCACGAATTCGAAATGCACTTGCTTATGCC
ACTCATACATTCCTTCAGAAGCAAGGGTTTCTCTACATTCACACTCCAAT
TATCACCACCAGTGATTGTGAGGGTGCTGGTGAGATGTTTCAAGTTACAA
CTCTAATAAGTGATGCTGACAAGTTGGAGAAGGAACTGATCAAGAATCCT
CCTCCATCAGAAGCTGACATAGAAGCCGCCAAGCTTGTTGTCAAGGAGAA
AGGAGAGGCTGTTGCAAAACTAAAATCTGATAAAGCAGGCAAGGAGGCGA
TAAGTGCTAGTGTTACTGAACTTACAAAAGCGAAAGAGAATCTTGCAAGG
CTCGAGGAAAGATCAAAGCTTAAGCCAGGAATCCCACAAAAGATGGAAGA
TT
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