CX294126

Overview
NameCX294126
Unique NameCX294126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_YERE8 (Asparaginyl-tRNA synthetase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=asnS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.031e-17
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   10 VGMVD-PAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG VD P  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  + G+ ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  100 VGWVDDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQAIHRFFDENGYFWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_ERWCT (Asparaginyl-tRNA synthetase OS=Erwinia carotovora subsp. atroseptica GN=asnS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.031e-17
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   10 VGMVD-PAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG VD P  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  + G+ ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  100 VGWVDDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQAIHRFFHENGYFWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_PSEA6 (Asparaginyl-tRNA synthetase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=asnS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.959e-17
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 1
Query:   10 VGMVD-PAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V+ P  YP+   + +LE+LR+    RPRTN I AV R+RN L+ A H F  + G+ ++ TPI+T SD EGAGEMF+V+TL
Sbjct:   99 VGWVENPDTYPMAPKRHSLEYLREHAHLRPRTNVIGAVTRVRNCLSQAIHRFFHENGYCWVSTPILTASDTEGAGEMFRVSTL 181          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_HAEIE (Asparaginyl-tRNA synthetase OS=Haemophilus influenzae (strain PittEE) GN=asnS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.959e-17
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AV+R+R+ L+ A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  106 DPDTYPMAAKRHSIEYLREVAHLRPRTNIIGAVSRVRHCLSQAIHRFFHEQGFYWVATPLITASDTEGAGEMFRVSTL 183          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_PHOLL (Asparaginyl-tRNA synthetase OS=Photorhabdus luminescens subsp. laumondii GN=asnS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.171e-17
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    1 VLDVGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            ++ +G+V DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  + G+ ++ TP+IT +D EGAGEMF+V+TL
Sbjct:   97 IVVIGLVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARMRHTLAQALHRFFHENGYFWVSTPLITAADTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_LAWIP (Asparaginyl-tRNA synthetase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=asnS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.171e-17
Identity = 44/86 (51.16%), Postives = 54/86 (62.79%), Query Frame = 1
Query:   13 GMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDAD 270
            G+  P  +P+ K + + EFLR     R RTN   A+ RIR   A A H +  K+GF YIHTPI+T SDCEGAGEMF+VTT  S  D
Sbjct:   98 GLAAPEVFPLQKKRHSDEFLRTIAHLRVRTNKYGAIFRIRAEAAQAIHNYFYKKGFYYIHTPILTGSDCEGAGEMFRVTTAHSSND 183          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_WIGBR (Asparaginyl-tRNA synthetase OS=Wigglesworthia glossinidia brevipalpis GN=asnS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.504e-16
Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKN 297
            DP KYPI     TLE+LR     RPRTN I +V+RIRN +    H FL K+GF+++ +PIIT+ + EG+GEMF+V+T       L K  + N
Sbjct:  105 DPGKYPISSKPHTLEYLRSFSHLRPRTNIIGSVSRIRNIIFQEVHNFLNKKGFIWVPSPIITSLNTEGSGEMFKVSTFDFKKIPLNKNKLIN 196          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_AERHH (Asparaginyl-tRNA synthetase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=asnS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.504e-16
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   10 VGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V DP  YP+   + ++E+LR++   R RTN + AV R+RN L+ A H F  +QG+L+I  P+IT SD EGAGEMF+V+TL
Sbjct:  100 VGWVEDPDTYPMAAKRHSIEYLREQGHLRARTNMVGAVTRVRNCLSQAIHRFFHEQGYLWIAAPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_PSYIN (Asparaginyl-tRNA synthetase OS=Psychromonas ingrahamii (strain 37) GN=asnS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.566e-16
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E++R+    R RTN   AV R+RN L++A H F  ++GF +I TPIIT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMSAKRHSIEYMREHAHLRARTNMFGAVTRVRNCLSHAMHNFFYEKGFNWISTPIITGSDAEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_MYCCT (Asparaginyl-tRNA synthetase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=asnS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.274e-15
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   10 VGMVDPA--KYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDAD 270
            + ++D A   YP+ K + T E+LR+    R +T T  A+ +IR+A AYA H F   +GF+YIH+PIIT++D EGAGE F VTT   DAD
Sbjct:   93 IELIDQAIEDYPLQKKEHTTEYLREIAHLRAKTKTFNAIFKIRSAAAYAIHKFFNDRGFVYIHSPIITSNDAEGAGEAFLVTTR-EDAD 180          
The following BLAST results are available for this feature:
BLAST of CX294126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
SYN_YERE83.031e-1751.81Asparaginyl-tRNA synthetase OS=Yersinia enterocoli... [more]
SYN_ERWCT3.031e-1751.81Asparaginyl-tRNA synthetase OS=Erwinia carotovora ... [more]
SYN_PSEA63.959e-1750.60Asparaginyl-tRNA synthetase OS=Pseudoalteromonas a... [more]
SYN_HAEIE3.959e-1751.28Asparaginyl-tRNA synthetase OS=Haemophilus influen... [more]
SYN_PHOLL5.171e-1747.67Asparaginyl-tRNA synthetase OS=Photorhabdus lumine... [more]
SYN_LAWIP5.171e-1751.16Asparaginyl-tRNA synthetase OS=Lawsonia intracellu... [more]
SYN_WIGBR1.504e-1646.74Asparaginyl-tRNA synthetase OS=Wigglesworthia glos... [more]
SYN_AERHH1.504e-1650.60Asparaginyl-tRNA synthetase OS=Aeromonas hydrophil... [more]
SYN_PSYIN2.566e-1650.00Asparaginyl-tRNA synthetase OS=Psychromonas ingrah... [more]
SYN_MYCCT1.274e-1548.31Asparaginyl-tRNA synthetase OS=Mycoplasma capricol... [more]

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Properties
Property NameValue
Genbank descriptionC05011D07SK AbsAOv1 Citrus clementina cDNA clone C05011D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294126 ID=CX294126; Name=CX294126; organism=Citrus clementina; type=EST; length=502bp
GTGCTCGATGTGGGTATGGTTGACCCTGCTAAGTACCCTATCCCCAAGAC
AAAGCTCACTCTTGAGTTTTTGAGGGATCGTATTCCTTTTCGGCCCAGGA
CAAACACGATAGCTGCGGTTGCACGAATTCGAAATGCACTTGCTTATGCC
ACTCATACATTCCTTCAGAAGCAAGGGTTTCTCTACATTCACACTCCAAT
TATCACCACCAGTGATTGTGAGGGTGCTGGTGAGATGTTTCAAGTTACAA
CTCTAATAAGTGATGCTGACAAGTTGGAGAAGGAACTGATCAAGAATCCT
CCTCCATCAGAAGCTGACATAGAAGCCGCCAAGCTTGTTGTCAAGGAGAA
AGGAGAGGCTGTTGCAAAACTAAAATCTGATAAAGCAGGCAAGGAGGCGA
TAAGTGCTAGTGTTACTGAACTTACAAAAGCGAAAGAGAATCTTGCAAGG
CTCGAGGAAAGATCAAAGCTTAAGCCAGGAATCCCACAAAAGATGGAAGA
TT
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